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7 protocols using bs 0982r

1

Western Blot Analysis of Protein Signaling

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Cells (106 cells/well) were sonicated in an ice bath, lysed with lysis solution containing protease inhibitors and then centrifuged at 4 °C and 12,000 rpm for 15 min. The total protein concentration was determined by a BCA protein concentration assay kit (MD913053; MDL, Beijing, China). The proteins were separated by SDS–PAGE (10%) and transferred onto polyvinylidene difluoride (PVDF) membranes (ISEQ00010, 0.22 μm; Millipore, Billerica, MA, USA) by transfer electrophoresis. The membrane was blocked with nonfat dry milk (5%) in Tris-buffered saline–Tween (TBST) at room temperature for 1 h. The proteins on the membrane were reacted with the corresponding primary antibodies against IκBα, phospho-IκBα, p65, phospho-p65, CD36 (bs-1287R, bs-2513R, bs-0465R, bs-0982R, bs-1100R; Bioss, Beijing, China) and β-actin (MD6553; MDL, Beijing, China) overnight at 4 °C. The membrane was incubated with the anti-rabbit secondary antibodies (1:4000; MD912577; MDL, Beijing, China) at room temperature for 1 h in the dark after being washed with TBST. The membrane was washed with TBST again, and finally, the protein bands were captured with a chemiluminescence imaging system (ChemiScope 6100, CLINX Science Instruments, Shanghai, China).
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2

Western Blot Analysis of Immune Markers

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TAM treated by DHA or other controls were washed three times with PBS and lysed in a RIPA buffer with 1% protease inhibitor for 40 min. Cell lysates were centrifuged and protein concentration was measured using a BCA Assay Kit. Equal proteins (10–30 μg) were fractionated by SDS-PAGE and transferred to a PVDF membrane. The membranes were blocked with 3–5% bovine serum albumin in TBST and incubated with primary antibodies of iNOS (ab15323, Abcam, Cambridge, United Kingdom), GBP5 (13220-1-AP, Proteintech, Wuhan, China), p53 (bs-2090R, Bioss, Beijing, China), γ-H2A.X (bs-3185R, Bioss, Beijing, China), NF-κB (10745-1-AP, Proteintech, Wuhan, China), p-NF-κB (bs-0982R, Bioss, Beijing, China), and GAPDH (PMK053C, BioPM, Wuhan, China) overnight at 4°C. Then the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies. Protein bands were reacted using an ECL kit (PMK003, BioPM, Wuhan, China), and the films were exposed using a Bio-Imaging system (170-8265, Bio-Rad).
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3

Protein Expression Analysis in Tracheal Tissue and Cells

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Western blotting was used to measure the related proteins. The total protein of tracheal tissue and HD11 cells was extracted by the whole-cell lysis method. Primary antibodies for TLR4 (bs-20379R, Bioss, Beijing, China), IκBα (10268-1-AP, Proteintech, Wuhan, China), p-IκBα (bs-2513R, Bioss), p65 (bs-0465R, Bioss), p-p65 (bs-0982R, Bioss), IL-1β (A16288, ABclonal, Wuhan, China), TNF-α (bsm-33207M, Bioss), JNK (bs-20760R, Bioss), p-JNK (bs-17591R, Bioss), ERK (bs-2637R, Bioss), p-ERK (bs-1645R, Bioss), and GAPDH (A5028, bimake, Houston, TX) (all at 1:1,000 dilution) protein were incubated for 12 h at 4°C. Secondary anti-rabbit IgG horseradish peroxidases (bs-0061R, Bioss) were incubated for 1.5 h. Enhanced chemiluminescence (ECL) reagent (Beyotime, China) was used to visualize the bound immune complexes by automatic chemiluminescence image analysis system (Tanon, China) and the density of the protein bands was measured with Image J software (V 1.42, National Institutes of Health; Hu et al., 2021 ).
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4

Western Blot Analysis of Cellular Signaling

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Cells treated as described earlier were washed three times with PBS and lysed in RIPA buffer with a 1% protease inhibitor. Cell lysates were centrifuged, and the protein concentration was measured using a BCA assay kit. Equal protein aliquots (10 μg) were fractionated by SDS-PAGE and transferred to a PVDF membrane. The membranes were blocked with 3% bovine serum albumin in TBST and incubated with primary antibodies of Bax (bs-0127R, Bioss, Beijing, China), p53 (bs-2090R, Bioss, Beijing, China), γ-H2A.X (bs-3185R, Bioss, Beijing, China), PCNA (bs-2006R, Bioss, Beijing, China), LC-3 (12741S, CST, Boston, United States), Atg-5 (10181-2-AP, Proteintech, Wuhan, China), Beclin-1 (bs-1353R, Bioss, Beijing, China), NF-κB (10745-1-AP, Proteintech, Wuhan, China), p-NF-κB (bs-0982R, Bioss, Beijing, China), STING (19851-1-AP, Proteintech, Wuhan, China), cGAS (ab252416, Abcam, Cambridge, United Kingdom), iNOS (ab15323, Abcam, Cambridge, United Kingdom), GBP5 (13220-1-AP, Proteintech, Wuhan, China), Caspase-3 (50599-2-Ig, Proteintech, Wuhan, China), and GAPDH (PMK053C, BioPM, Wuhan, China) overnight at 4°C, and then, the membranes were incubated with the horseradish peroxidase-conjugated secondary antibody. Finally, protein bands were developed using an ECL, and the films were exposed using a bio-imaging system (170-8265, Bio-Rad).
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5

Inflammatory Pathway Mechanisms in Mice

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All experiments were approved by the Administration Office of Laboratory Animals of South China Agricultural University. ICR female mice (6–8 weeks old) were housed with free food and water in a room with standard day/night cycle conditions. Piglets were purchased from Hunan New Wellful Co., Ltd. (Changsha, China). Antibodies against IL-1β (12426s), mammalian target of rapamycin (mTOR; 2972s), p-mTOR (5536s), and HIF-1α (14179s) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against IκB kinase (IKK; Sc-7607), p-IKK (sc-293135), p-IκB (Sc-8404), and apoptosis-associated speck like protein containing a caspase recruitment domin (ASC; Sc-514414) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Antibodies against IκB (51066-1-AP), p65 (10745-1-AP), and β-actin (60008-1-Ig) were purchased from Proteintech (Rosemont, IL, USA). The antibody against p-p65 (bs-0982R) was purchased from Bioss (Beijing, China). Antibodies against Nod-like receptor protein 3 (NLRP3; ab214185) and caspase-1 (ab179515) were purchased from Abcam (Cambridge, UK).
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6

Comprehensive IHC Analysis of Immune Markers

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Antibodies for IHC analysis included CRT (ab92516, Abcam), HSP90 (ab13495, Abcam), HMGB1 (ab79823, Abcam), PD-L1 (17952-1-AP, Proteintech), PD1 (18106-1-AP, Proteintech), CD11b (20991-1-AP, Proteintech), CD206(ab64693, Abcam), CD80 (BS-2211R,BIOSS), CD86 (ab213044, Abcam), MHCII (sc-59318, Santa Cruz), KI67 (ab16667, Abcam), PCNA (ab92552, Abcam), BAX (50599-2-lg, Proteintech), CASPASE3 (19677-1-AP,Proteintech), RAGE (bs-0177R) GBP5 (132201-AP, Proteintech), NF-κB (10745–1-AP, Proteintech), Phospho- NF-κB (bs-0982R, Bioss). Paraffin sections (5 μm) were dewaxed and rehydrated, antigen repaired with sodium citrate for 20 min, then incubated in 3% hydrogen peroxide for 10 min at room temperature. The paraffin sections were then blocked with 5% BSA for 30 min, stained with antibodies overnight at 4 °C, washed with PBS, and stained with secondary antibody (PV-9000, ZSGB-BIO) for 1 h at 37 °C. DAB (ZLI-9018, ZSGB-BIO) was applied for coloration for 5 min at room temperature. Hematoxylin was used to stain the nucleus.
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7

Quantifying NLRP3 and NF-κB Signaling

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Chicken lung tissues from each group was immersed in protein lysate and centrifuged, and supernatant was removed. The protein concentration was measured using the BCA detection kit. The same amount of protein was subjected to electrophoresis on polyacrylamide gel and transferred to a PVDF membrane using wet transformation method (110 V, 90 min). The membrane was blocked with 5% fetal bovine serum and incubated with primary NLRP3 polyclonal antibody (1:400, WanleiBiotechnology Co., Ltd., Shenyang, China), NF-κB p65 polyclonal antibody (1:1,000, bs-0465R, Bioss, Beijing, China), p-NF-κB p65 polyclonal antibody (1:1,000, bs-0982R, Bioss, Beijing, China), and β-actin polyclonal antibody (1:5,000, bs-0061R, Bioss, Beijing, China) overnight at 4°C. Further, the membrane was incubated with antirabbit IgG peroxidases (bs-0061R, Bioss, Beijing, China) for 1 h at room temperature. The bands were visualized and imaged using ECL (Biosharp Life Sciences, Hefei, China) and gel imaging system (tanon-5200, Tianneng Technology Co., Ltd., Shanghai, China). Image J software was used for the analysis of gray values.
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