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5 protocols using anti hif1a

1

Investigating Cellular Stress Signaling Pathways

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Anti-HA (Cat. number: 3724), anti-BMK1 (Cat. number: 3372), anti-phosho-ERK1/2 (Thr202/Tyr204) (Cat. number: 4376), anti-BNIP3 (Cat. number: 13795), anti-BNIP3L (Cat. number: 12396), anti-HIF1A (Cat. number: 14179), anti-Annexin V (Cat. number: 8555) and anti-ACTIN (Cat. number: 4967) antibodies were from Cell Signaling (Beverly, MA, USA). HA-tagged MEK5D-expressing vectors and BMK1 inhibitor (XMD8-92) were described in our previous study [12 (link)]. Sequence of shRNA (MISSION® shRNA Library, sigma, USA) used in this study was described in Supplementary Table S4. pLKO.1-scramble shRNA was used as shRNAi control.
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Western Blot Protein Analysis

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Total protein extracts were generated using lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 1 mM EDTA) supplemented with PhosSTOP and Complete Phosphatase/Protease Inhibitor Cocktails (Roche Diagnostics GmbH, Mannheim, Germany). Protein extracts (20–25 μg per sample) were loaded onto SDS-PAGE gels and transferred electrophoretically to PVDF membranes and immunodetection of proteins was performed using ECL™ Western Blotting Detection Reagents (GE Healthcare, Buckinghamshire, UK). The following primary antibodies were used: anti-Myc, anti-HIF1a, anti-4EBP1, anti-eIF4E, anti-YBX1, anti-Snail, anti-CA9, anti-Smad2/3, anti-β-catenin (Cell Signaling), anti-phospho Smad2 (Millipore), anti-β3 integrin, anti-MMP3, anti-N-cadherin (Abcam), anti-CycD1, anti-vimentin (Santa Cruz Biotechnology), anti-BMP2, anti-CCDC103, anti-TTC30B, anti-EIF3G, anti-RPL11 (CusaBio), anti-Cx31 (Alpha Diagnostics), anti-eIF4E2 (GeneTex), anti-αv integrin and anti-β-actin (1:500; Calbiochem, Darmstadt, Germany). Anti-mouse and anti-rabbit HRP secondary antibodies were from Pierce. Bound antibodies were visualized with an enhanced chemiluminescence detection kit (Amersham Pharma-Biotech).
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Western Blot Analysis of Protein Targets

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Whole-cell lysates were prepared with RIPA lysis buffer of appropriate volume. Proteins were separated by 10% SDS-PAGE gel and transferred to PVDF membrane, following membrane blocking with 5% Albumin from bovine serum (BSA). Then the membranes were incubated in primary antibodies against targeted protein at 4 °C overnight, and after further incubated with HRP-conjugated secondary antibody, the bands were scanned. Antibodies used in experiments included: anti-TGFBR2 (Cell Signaling Technology, USA), anti-EZH2 (Abcam, USA), anti–HIF1A (Cell Signaling Technology, USA), anti-HIF2A (Cell Signaling Technology, USA), and anti-H3K27me3 (Abcam, USA). All primary antibodies except for internal control were used at 1:1000 dilution. GAPDH and α-tubulin (Boster, China) were used as the internal control at 1:5000 dilution.
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4

Western Blot Analysis of Metabolic Regulators

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Total cellular proteins were extracted from CD4+T cells and spleen mononuclear cells using a protein extraction kit (Keygen Biotech, Nanjing, China). Proteins were separated by 10% SDS/PAGE and transferred to PVDF membranes (Merck Millipore, USA). Membranes were washed three times with TBST, then blocked in TBST containing 5% BSA for 2 h at room temperature. Membranes were then incubated overnight at 4°C with anti-Sirt2, anti-HIF1a, anti-mTOR, anti-LDHA, anti-Glut1, anti-HK2, anti-PKM2 antibody (1:1000 dilution; Cell Signaling Technology) and anti-GAPDH(1:1000; Santa Cruz). Membranes were washed in TBST three times, and then incubated with goat anti-Rabbit IgG secondary antibody (1:5000 dilution; Santa Cruz) solution for 2 h at room temperature. Finally, protein bands were visualized using a chemiluminescence western blot detection system (Alpha Innotech; MicroChemi 4.2).
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5

Western Blot Analysis of Cell Signaling Proteins

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Protein was extracted from harvested cells using an RIPA buffer (Cell Signaling, #9806) supplemented with PMSF (Cell Signaling, #8553) and protein concentration was calculated with Bradford assay. Total protein extracts were subjected to electrophoresis on 10% SDS-polyacrylamide gels and transferred on PVDF membranes. After blocking with 5% non-fat milk in TBS-T, the membranes were probed overnight at 4 °C with the following antibodies diluted in the same blocking buffer: anti-p53 (1:2000, mouse, Dako, #M7001), anti-HIF-1a (1:1000, rabbit, Cell Signaling Technology, #36169), anti-PD-L1 (1:500 mouse, Origene, #TA808771), and anti-β-actin (1:2000, mouse, Cell Signaling Technology, #3700). Then, the membranes were washed with TBS-T and incubated for 1 h at room temperature with the following species-specific HRP-linked secondary antibodies: anti-mouse (1:4000 Cell Signaling Technology, #7076) and anti-rabbit (1: 4000 Cell Signaling Technology, #7074). After brief washing with TBS-T, membranes were incubated with LumiGLO chemiluminescent substrate and hydrogen peroxide (Cell Signaling Technology, #7003) and pictures were captured using the Invitrogen iBright FL1500 Imaging System.
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