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9.4 t apex ultra hybrid qh fticr ms

Manufactured by Bruker
Sourced in United States

The 9.4 T Apex-ultra™ hybrid Qh-FTICR MS is a high-resolution mass spectrometer that combines a quadrupole-hexapole (Qh) interface with a Fourier-transform ion cyclotron resonance (FTICR) mass analyzer. It features a 9.4 Tesla superconducting magnet and is designed for high-performance mass analysis and structural characterization of complex samples.

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6 protocols using 9.4 t apex ultra hybrid qh fticr ms

1

Identification of Serum Unsaturated FFAs

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Extracted FFAs were analyzed using a 9.4 T Apex-ultra™ hybrid Qh-FTICR MS (Bruker Daltonics, Billerica, MA, USA) equipped with a NanoMate system (Advion BioSciences, Ithaca, NY, USA) in the negative ion mode. 0.1 µL of the sample followed by 0.5 µL of air was introduced directly into the nanoESI source, with a voltage of -1.8 kV and a head pressure of 0.7 psi at a flow rate of 100 nL/min. Each spectrum was accumulated 10 full scans over the mass range of 150-400 Da and the resolution was 200,000 at m/z 400. A mixture of C15:0 (molecular weight = 242.22458 Da), C17:0 (270.25588 Da), and C21:0 (326.31848 Da) was employed to calibrate the instrument before analysis.
Serum unsaturated FFAs in this study were identified on the basis of their observed accurate molecular masses and reliable isotope distributions detected by FTICR MS. Their mass error was ≤ 0.00025 Da and the relative intensity error of their isotopic peaks was < 2%. For the missing levels of unsaturated FFAs, the baseline intensity in each spectrum was adopted for the following statistical analysis.
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2

High-Resolution FTICR-MS for Fatty Acid Analysis

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All experiments were performed by a 9.4 T Apex-ultra™ hybrid Qh-FTICR MS (Bruker Daltonics, Billerica, MA, USA) equipped with a NanoMate system (Advion BioSciences). The NanoMate system includes a cooling unit set at 4 °C to cool sample solutions and nanoelectrospray source, which includes a 96-well plate, conductive pipette tips, and nanoChip with a 20 × 20 array of nozzle. The sample volume of 0.1 µL was directly infused using a low delivery gas pressure of 0.7 psi, and a voltage of -1.8 kV was applied to the nozzle to generate nanoelectrospray at a flow rate of approximately 100 nL/min.
A mass spectrum was accumulated by 10 full scans over the m/z range of 150-400 with the resolution of 200,000 at m/z 400. A mixture of C15:0 (molecular weight, 242.22458 Da), C17:0 (270.25588 Da), and C21:0 (326.31848 Da) was used to calibrate the instrument. All mass spectra were processed using DataAnalysis 4.0 (Bruker Daltonics). The FFAs were identified based on their observed accurate molecular masses relative to theoretical values with the mass error of ≤ 0.00029 Da and reliable isotope distribution relative to theoretical distribution with relative standard deviation (RSD) of <2%. The baseline intensity in each spectrum was adopted as their intensities of missing FFAs.
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3

High-Resolution FTICR-MS Analysis

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All experiments were performed on a 9.4 T apex-ultra™ hybrid Qh-FTICR MS (Bruker Daltonics, Billerica, MA) equipped with TriVersa NanoMate® electrospray ionization source (Advion BioSciences, Ithaca, NY, USA). The sample was introduced by TriVersa NanoMate® with 0.5 psi gas pressure, 1.6 kV voltage in positive ion mode. The parameters of FTICR MS were as follows: both of the capillary and spray shield voltages were 0 V, the drying gas temperature was 150 °C. Mass spectrum was accumulated by 10 full scans over the m/z range of 700-900 with 512 kilobytes per second acquisition size at a resolution of 450,000 at m/z 400.
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4

Graphene Oxide Matrix-Assisted Lipid Analysis

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The GO solution (0.5 mg/mL in water) was sonicated for 2 h, followed by the centrifugation at 13,000 × g to remove the unexfoliated GO particles. Then the supernatant was collected for further use as a MALDI matrix. 0.3 μL of the GO solution was first pipetted on the MTP AnchorChipTM plate (Bruker Daltonics, Billerica, MA, USA) and air-dried prior to the addition of 0.3 μL of the redissolved sample onto the GO matrix for mass spectrometric analysis.
All experiments were performed using a 9.4 T Apex-ultraTM hybrid Qh-FTICR MS (Bruker Daltonics, Billerica, MA, USA) equipped with a 355 nm Nd:YAG Smartbeam II 200 Hz laser in negative ion mode. Instrument calibration was performed using a mixture of C15:0 at m/z 241.21730, C17:0 at m/z 269.24860, C19:0 at m/z 297.27990, and C21:0 at m/z 325.31120 in negative ion mode. Mass spectrum of each sample was acquired over the m/z range of 150~400 with the resolution of 200,000 at m/z 400, along with 100 laser shots per scan and the skimmer 1 voltage of −45 V in negative ion mode. The fragmentation degree of the model compounds was calculated based on the equation (1).

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5

Hybrid FTICR-MS Lipid Profiling

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All experiments were performed using a 9.4 T Apex-ultraTM hybrid Qh-FTICR MS (Bruker Daltonics, Billerica, MA, USA) equipped with a 200 Hz, 355 nm Nd: YAG laser. All spectra were acquired using ApexControl 3.0.0 (Bruker Daltonics). A lipid mixture (PC(24:0) at m/z 622.44423, PC(32:0) at m/z 734.56943, PC(36:0) at m/z 790.63203, and PC(44:2) at m/z 898.72593 from Avanti Polar Lipids, Inc.) was used to calibrate the instrument over the m/z range of 600 ~ 1000 in the positive ion mode and a FA mixture of three commercially-available standard (C16:0 at m/z 255.23296, C18:0 at m/z 283.26425, and C22:0 at m/z 339.32684 from Sigma-Aldrich) combined with the ESI Tuning Mix (Part No. G2432A, Agilent Technology, Inc.) was used to calibrate the instrument over the m/z range of 100 ~ 1000 in the negative ion mode. For membrane lipid profiling, a mass spectrum was accumulated with three full scans once with 100 laser shots in the positive and negative ion modes, respectively. For each slide, eight mass spectra were randomly collected.
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6

Tissue Lipidomics by High-Resolution FTICR-MS

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MSI or mass spectrometry profiling was performed on tissue sections using a 9.4 T Apex-ultraTM hybrid Qh-FTICR MS equipped with a 355 nm and 200 Hz Nd:YAG Smartbeam laser (Bruker Daltonics, Billerica, MA, USA). MSI data were acquired on two adjacent tissue sections at the spatial resolution of 150 μm in the negative ion modes. A full scan mass spectrum was acquired at 80 laser shots each over a mass range of 100–1000 Da in negative ion mode with the resolutions of 66,000 at m/z 400. External calibration was performed using a mixture of FA(16:0) (m/z 255.23295), FA(18:1) (m/z 281.24860), FA(20:4) (m/z 297.27990), LPE(18:0) (m/z 480.30956), PA(18:0/18:0) (m/z 703.52833), PE(18:0/18:0) (m/z 746.57053), PI(18:0/20:4) (m/z 885.54985) (Avanti Polar Lipids Inc., Alabaster, AL, USA).
The profiling data were acquired at the same experimental parameters as those of the MSI data acquisition. To confirm data reliability and to assess the heterogeneity of tissues, ten mass spectra at different positions of the cancerous area and the adjacent area were acquired randomly.
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