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Alexa fluor 488 conjugated anti rabbit antibody

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The Alexa Fluor 488-conjugated anti-rabbit antibody is a secondary antibody used for detection in various immunoassays. It is designed to bind to rabbit primary antibodies, providing a fluorescent label with an excitation/emission maximum of 495/519 nm.

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60 protocols using alexa fluor 488 conjugated anti rabbit antibody

1

Immunofluorescent Analysis of Testicular Tight Junctions

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Immunofluorescent analyses of tight junctions were performed on Bouin’s fixed paraffin-embedded testicular sections (5 µM). Heat treatment in a sodium citrate-based antigen retrieval system was used, followed by incubation in 3% hydrogen peroxide for 15 min to quench hydrogen peroxidase activity. Nonspecific binding was blocked using normal horse serum diluted 1:4 in PBS with 5% BSA (Bovine Sum Albumin). Testis sections were then incubated with anti-ZO-1 antibody (Cat # 617300; Invitrogen) diluted 1:100 blocking solution overnight at 4°C, followed by a 1-h room temperature incubation in Alexa Fluor 488-conjugated anti-rabbit antibody (1:500; Life Technologies). Anti-occludin antibody (Cat No. E6134R; Cell Signaling) diluted 1:200 in blocking solution overnight at 4°C, followed by incubation for 1 h at room temperature with Alexa Fluor 488-conjugated anti-mouse antibody (1:500; Life Technologies). Anti-caspase 3 antibody (Cat No. 9664L; Cell Signaling) diluted 1:100 in blocking solution overnight at 4°C, followed by a 1-h room temperature incubation in Alexa Fluor 488-conjugated anti-rabbit antibody (1:500; Life Technologies). Sections were mounted with VectaShield Mounting medium (Vector Labs). All sections were imaged as described above.
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2

Immunofluorescence Staining and Co-localization Analysis

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Cells were fixed for immunofluorescence staining, which was performed as described previously (16 (link)). Primary antibodies targeting EI24 (NBP2-13949, Novus, [Littleton, CO, USA]) or LC3 (#2775, Cell Signaling) and Alexa Fluor® 488-conjugated anti-rabbit antibodies (Molecular Probes, Carlsbad, CA, USA) were used. Double immunofluorescence staining was performed sequentially. First, the fixed cells were incubated with 1% bovine serum albumin and 0.02% Triton X-100 in phosphate-buffered saline (PBST–BSA) and anti-LC3 antibody (1:500, #2775, Cell Signaling) overnight at 4°C, followed by Alexa Fluor® 488-conjugated anti-rabbit antibodies (1:500, Molecular Probes) for 1 h at room temperature. Alternatively, the fixed cells were incubated with PBST-BSA and anti-LAMP1 antibody (1:500, ab25630, Abcam [Cambridge, UK]) for 3 h at room temperature, followed by Alexa Fluor® 594-conjugated anti-mouse antibodies (1:500, Molecular Probes) and Hoechst 33342 (10 μg/ml, Molecular Probes) for 10 min. The cells were washed three times with PBST for 10 min after each incubation step. After mounting, the cells were visualized under a confocal microscope (Carl Zeiss Microscopy GmbH, Jena, Germany). Pearson's co-localization coefficients were analyzed by ZEN 2.6 (blue edition) as described (17 (link)).
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3

Imaging Dendritic Spines in Cortical Neurons

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Under deep anesthesia, ICR mice were fixed transcardially with 4% PFA in phosphate-buffered saline, pH 7.4. Fifty- or 100-μm-thick coronal sections were prepared with microslicer (VT1200S; Leica Biosystems). Sections were stained with Hoechst 33342 and mounted. Fluorescence images of 100-μm-thick sections were taken with a confocal laser-scanning microscope (TCS SP8; Leica Microsystems) using HC PL APO CS2 20×/0.75 NA multiple immersion lens (Leica Microsystems). Images were taken using the tile scan function of the confocal microscope. Fluorescence images of 50-μm-thick sections were taken using HC PL APO CS2 100×/1.40 NA oil immersion lens (Leica Microsystems). Basal dendrites of the cortical layer 2/3 pyramidal neurons were randomly sampled and captured. Image stacks were deconvolved using Huygens Essential version (Scientific Volume Imaging). Spines on tertiary dendrites were identified and counted in the 3D projection images with respect to each mouse. For immunohistochemical analysis, 50-μm-thick sections were prepared as described above, and immunostained with rabbit anti-HA antibody (Covance), followed by incubation with Alexa Fluor 488-conjugated anti-rabbit antibody (Invitrogen) and DAPI. Images were taken as described above.
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4

Visualizing Mitochondrial Protein SLC25A11

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Cells were fixed with 4% (w/v) paraformaldehyde and permeabilized with 0.5% Triton X-100. The cells were then stained with anti-SLC25A11 polyclonal antibody, Mitotracker (M22425, Invitrogen Life Technologies, Carlsbad, CA, USA) and Alexa Fluor 488-conjugated anti-rabbit antibody (A11008, Invitrogen Life Technologies, Carlsbad, CA, USA). Live cell imaging was taken by LSM510 Laser Scanning Microscope and Axio Observer Z1 (Carl Zeiss, Oberkochen, Germany). The relative intensity was normalized by the arithmetic mean intensity (from Zen software 2.6 blue edition).
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5

Flow Cytometric Analysis of Protein Expression

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Cells were harvested using 0.025% EDTA–trypsin and washed with PBS. Subsequently, they were fixed with 2% PFA and permeabilized with 0.1% saponin (MP Biomedicals, Inc., Solon, OH, USA) for 10 min. Cells were then incubated with anti-HN antibody (1:100, Novus Biol cat# NB300-246) or anti-FPR2 antibody (1:100, Novus Biol cat# NLS1878SS) in PBS for 1 h at room temperature. Finally, cells were incubated with Alexa Fluor 488 conjugated anti-rabbit antibody (1:100, Invitrogen cat# A-11070) in PBS for 1 h at room temperature. After washing, cells were resuspended in PBS and analyzed by flow cytometry using a FACScalibur instrument (Becton Dickinson, Franklin Lakes, NJ, USA). Data obtained from flow cytometry analysis were processed using FlowJo v10 software, as previously described [16 (link),18 (link)].
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6

Evaluating VCAM-1 Expression on HUVECs

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Expression of VCAM-1 on the surface of HUVECs was evaluated by incubating 2 × 105 HUVECs in EGM in the absence or presence of 20 ng ml−1 human TNFα (hTNFα Millipore, Billerica, MA, USA) for 24 h. After harvesting and washing with phosphate-buffered saline solution (PBS), the cells were fixed in 4% paraformaldehyde (PFA) for 20 min at room temperature. After blocking with PBS containing 1% bovine serum albumin (BSA) for 1 h at room temperature, the cells were incubated first with mouse anti-VCAM-1 monoclonal antibody (1 μg ml−1; Abcam, Cambridge, UK) for 1 h at 37 °C, and then with Alexa Fluor 488-conjugated anti-mouse antibody (1:1000; Invitrogen) for 1 h at 37 °C. The effects of anti-VCAM-1-D6 IgG on endothelial cell activation were evaluated by incubating 2 × 105 HUVECs in the absence or presence of 20 ng ml−1 hTNFα (Millipore), 20 μg ml−1 control IgG or anti-VCAM-1-D6 IgG for 24 h. After blocking with PBS containing 1% BSA for 1 h at room temperature, the cells were incubated first with rabbit anti-ICAM-1 monoclonal antibody (1:500; Abcam) for 1 h at 37 °C, and then with an Alexa Fluor 488-conjugated anti-rabbit antibody (1:1000; Invitrogen) for 1 h at 37 °C. Samples were analyzed by flow cytometry using a FACSCalibur system (BD Biosciences, San Jose, CA, USA) with the aid of FlowJo software (TreeStar, Ashland, OR, USA).
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7

Immunofluorescence Localization of Aquaporin-8

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The cells were rinsed with PBS and fixed in cold acetone for 10 min at 4 °C. Subsequently, the cells were washed in PBS and incubated with PBS containing 0.5% Triton X-100 for 4 min at room temperature. After washing with PBS, the cells were incubated with 10% fetal bovine serum (FBS) in PBS for 60 min. After removing the buffer, the cells were incubated for 60 min at room temperature with 0.2% FBS / 3% BSA in PBS containing goat polyclonal antibody specific for AQP8 (Santa Cruz Biotechnology) together with rabbit polyclonal antibody specific for VDAC1 (Abcam) or mouse monoclonal antibody specific for cytochrome c (Cell Signaling). After three times washing in PBS containing 0.1% Tween-20 (PBS-T), the cells were incubated for 60 min at room temperature with 0.2% FBS / 3% BSA in PBS containing Alexa Fluor 546-conjugated anti-goat antibody (Invitrongen) together with Alexa Fluor 488-conjugated anti-rabbit antibody (Invitrogen) for VDAC1 staining or Alexa Fluor 488-conjugated anti-mouse antibody (Invitrogen) for cytochrome c staining. After three times washing with PBS-T and three washes in PBS, the fluorescence images were obtained by using confocal microscope (LSM700, Carl Zeiss) and analyzed by using LSM Image Browser (Carl Zeiss).
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8

Immunofluorescence Staining of β-Catenin

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HK-2 cells cultured on cell slides were fixed in 4% formaldehyde for 30 minutes, permeabilized in 0.1%Triton X-100 for 10 minutes and blocked in 5% bovine serum albumin (BSA) in PBS buffer for 1 hour at room temperature. The primary antibody for non-phosphorylated β-catenin (1:500, Cell Signaling Technology, USA) was incubated overnight at 4°C. The secondary AlexaFluor488-conjugated anti-rabbit antibody (Invitrogen, Carlsbad, CA) was used at a 1:150 dilution for 1 hour at RT. All antibodies were diluted with PBST containing 5% bovine serum albumin. Images were obtained using a Leica TCS SP5 confocal system confocal microscopy (Leica, Wetzlar, Germany)
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9

Immunofluorescence Visualization of ORF M Protein

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Cells were seeded on 4 well glass slides (Millipore) and infected at an MOI of 1 for 20 h. At various times post-infection, slides were gently washed with PBS and fixed with ice-cold methanol for 20 min at −20 °C. After washing again with PBS, they were blocked at room temperature for 1 h with 3% bovine serum albumin (BSA) diluted in PBS. Slides were then probed with the ORF M antibody at a concentration of 1:100 in 1% BSA in TBS-T overnight at 4 °C. After washing gently with TBS-T 3 times for 15 min each, the slides were incubated at room temperature for 1 h in the dark with Alexa Fluor 488 conjugated anti-Rabbit antibody (#A-11034, Invitrogen, Thermo Fisher Scientific) diluted to 1:100 in 1% BSA in TBS-T. After washing again with PBS 3 times for 15 min each, the slides were mounted using a coverslip and DAPI gel mounting medium (#F6057, Sigma-Aldrich, Darmstadt, Germany) and visualized using a Zeiss Axio Scope.A1 microscope and DAPI and FITC filters.
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10

Antibody Detection for Protein Analysis

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The following primary antibodies were used in the study: polyclonal anti-C-terminal APN antibody (Novus Biologicals, Littleton, CO), anti-anti-N-terminal APN antibody (Abcam, Cambridge, UK), anti-AdipoR1 (C-14) antibody (Santa Cruz Biotechnology, Santa Cruz, CA), anti-alix (Cell Signaling, Beverly, MA), anti-αS (Cell Signaling) and monoclonal anti-αS (syn-1, BD Biosciences, Franklin Lakes, NJ), anti-pαS (Wako Pure Chemical Industries, Osaka, Japan), anti-flottilin-1 (BD Biosciences), and anti-ß-actin (Sigma) antibodies. The secondary antibodies were Alexa Fluor 488-conjugated anti-rabbit antibody and Alexa Fluor 594-conjugated anti-mouse antibody (Invitrogen, Carlsbad, CA).
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