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Orca ag

Manufactured by Hamamatsu Photonics
Sourced in Japan, United Kingdom

The ORCA-AG is a high-performance, scientific-grade camera designed for a wide range of applications in scientific research and industrial imaging. It features a large active area, high quantum efficiency, and low noise, making it well-suited for tasks such as fluorescence microscopy, bioluminescence imaging, and low-light applications. The ORCA-AG provides excellent image quality and sensitivity, enabling researchers and professionals to capture high-resolution, detailed images and data.

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35 protocols using orca ag

1

Quantifying Centromeric Fluorescence Intensity

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For experiments involving DLD-1 TIR1 cells, images were captured as 0.2 μm z sections at room temperature on an inverted fluorescence microscope (Leica DMI6000B) at 100× 1.4 NA oil immersion objective lens, equipped with a charge-coupled device camera (Hamamatsu Photonics ORCA AG). Images were deconvolved using LAS-X software (Leica) and max-projected for fluorescence intensity measurements. The mean fluorescence intensity at centromeres was measured using an ImageJ macro, CRaQ v1.12, under default parameters. Plots were generated from three independent immunofluorescence experiments. For experiments involving hTERT RPE-1 cell lines imaging was performed on a DeltaVision Core system (Applied Precision) consisting of an Olympus IX71 inverted microscope equipped with a CoolSNAPHQ2 camera (Photometrics). Images were captured as 0.2 μm z sections at room temperature with a 100× 1.4 NA oil immersion objective lens (Olympus), deconvolved and 3D maximum intensity projected using DeltaVision’s softworx software. The integrated fluorescence intensity at centromeres was measured using Fiji (Giunta et al., 2021 (link)).
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2

Live-cell Imaging of Fluorescent Proteins

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Living cells on 35-mm glass-bottom dishes were incubated in Hanks’ Balanced Salt Solution (HBSS) containing 15 mM HEPES-NaOH (pH 7.4) and imaged on an inverted microscope (IX-81, Olympus) equipped with a standard 75-W xenon lamp, a ×40 objective lens (UPlanSApo ×40/0.95 NA) and a cooled CCD camera (ORCA-AG, Hamamatsu Photonics). The data were analyzed using Excel (2019). The fluorescence intensity at t = 0 was normalized to 1,000 photons/s/molecule, and the time axis was adjusted according to the standard method6 (link) (Fig. 1i and Table 1).
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3

Measuring Cell Stiffness via Magneto-rotational Twisting

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Individual SMCs contraction was measured directly using MTC, which monitors dynamic changes in cell stiffness as described previously42 (link). In brief, a functionalized microbead bound to an adherent cell is first magnetized horizontally and then twisted in a vertically aligned homogenous magnetic field (20 Gauss). Here, lateral bead displacement in response to the resulting oscillatory torque is detected via a charge-coupled device camera (Hamamatsu Orca AG) attached to an inverted optical microscope, with an accuracy of 5 nm using an intensity-weighted center-of-mass algorithm43 (link). The ratio of specific torque to lateral bead displacements is then taken as a measure of the complex cell stiffness in units of Pascal per nm (Pa/nm). The cell stiffness was measured in each cell and, unless otherwise stated, represented as geometric mean ± s.e.m.42 (link), 43 (link). The cells for these studies were obtained from discarded human tissues in accordance with the studies approved by Thomas Jefferson University IRB and based on use of deidentified, discarded tissues were judged to be Not Human Subjects Research.
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4

Spinning-Disk Confocal Microscopy Protocol

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All samples were visualized using a spinning-disk confocal head (CSU-X1; Yokogawa) with Borealis modification (Spectral Applied Research) and a quad bandpass 405/491/561/642 dichroic mirror (Semrock). The confocal was mounted on a Ti inverted microscope (Nikon) equipped with a 60× Plan Apo NA 1.4 oil immersion objective or 60× CFI Plan Apochromat NA 1.2 water immersion objective and the Perfect Focus System for continuous maintenance of focus (Nikon). Green fluorescence images were collected using a 491-nm solid-state laser controlled with an acousto-optic tunable filter (AOTF; Spectral Applied Research) and ET525/50 emission filter (Chroma Technology). Red fluorescence images were collected using a 561-nm solid-state laser controlled with an AOTF and ET620/60 emission filter (Chroma Technology). All images were acquired with a cooled charge coupled device camera (ORCA AG; Hamamatsu Photonics) controlled with MetaMorph software (version 7.0; Molecular Devices) and archived using ImageJ (National Institutes of Health). In some cases, linear adjustments were applied to enhance the contrast of images using levels in the image adjustments function of ImageJ.
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5

FISH Visualization of tRNA Localization

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Cells were grown in 15 mL of medium overnight at 23°C to early log phase (OD600 = 0.15–0.3). Temperature-sensitive cells were shifted to 37°C for 2 or 4 h before OD600 reached 0.3. Cells were collected, and FISH was performed as previously described using probe SRIM15 for tRNATyr (Sarkar and Hopper 1998 (link)) with the previously described modifications (Stanford et al. 2004 (link)). Images were captured using a Nikon microscope equipped with an UltraView Vox spinning disk confocal apparatus (PerkinElmer Life and Analytical Science) and a cooled charge-coupled device camera (Orca-AG, Hamamatsu). tRNA signals were visualized using a 561-nm (red) argon ion laser, and DNA was stained by DAPI and visualized using a 405-nm (blue) laser and a 60×/1.4 NA objective lens. Images were captured using Volocity software and National Institutes of Health ImageJ and assembled using Adobe Photoshop C6.
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6

Near-Infrared Imaging of Cartilage Tissue

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Cartilage tissues were placed in 2% paraformaldehyde in PBS for 30 min before mounting in Tissue-Tek OCT compound (Fisher Scientific, Pittsburgh, PA) and flash-freezing in liquid nitrogen. Frozen samples were cryosectioned (10 μm per slice), observed by NIR fluorescence microscopy, and also stained with Alcian Blue or hematoxylin and eosin (H&E), respectively. NIR fluorescence microscopy was performed on a 4-filter Nikon Eclipse TE300 microscope system as previously described.[21 (link),22 (link)] The microscope was equipped with a 100 W mercury light source (Chiu Technical Corporation, Kings Park, NY), NIR-compatible optics, and a NIR-compatible 10X Plan Fluor objective lens and a 100X Plan Apo oil immersion objective lens (Nikon, Melville, NY). Images were acquired on an Orca-AG (Hamamatsu, Bridgewater, NJ). Image acquisition and analysis was performed using iVision software (BioVision Technologies, Exton, PA). Two custom filter sets (Chroma Technology Corporation, Brattleboro, VT) composed of 650 ± 22 nm and 750 ± 25 nm excitation filters, 675 nm and 785 nm dichroic mirrors, and 710 ± 25 nm and 810 ± 20 nm emission filters were respectively used to detect C700-OMe and C800-OMe signals in the frozen tissue samples.
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7

NIR Fluorescence Microscopy of Frozen Bone Tissues

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Bone tissues were placed in 2% paraformaldehyde in PBS for 30 min before mounting in Tissue-Tek OCT compound (Fisher Scientific, Pittsburgh, PA) and flash-freezing in liquid nitrogen. Frozen samples were cryosectioned (10 μm per slice), observed by NIR fluorescence microscopy, and also stained with hematoxylin and eosin (H&E). NIR fluorescence microscopy was performed on a 4-filter Nikon Eclipse TE300 microscope system as previously described.[9 (link),23 (link),24 (link)] The microscope was equipped with a 100 W mercury light source (Chiu Technical Corporation, Kings Park, NY), NIR-compatible optics, and a NIR-compatible 10X Plan Fluor objective lens and a 100X Plan Apo oil immersion objective lens (Nikon, Melville, NY). Images were acquired on an Orca-AG (Hamamatsu, Bridgewater, NJ). Image acquisition and analysis was performed using iVision software (BioVision Technologies, Exton, PA). Two custom filter sets (Chroma Technology Corporation, Brattleboro, VT) composed of 650 ± 22 nm and 750 ± 25 nm excitation filters, 675 nm and 785 nm dichroic mirrors, and 710 ± 25 nm and 810 ± 20 nm emission filters were respectively used to detect P700SO3 and P800SO3 signals in the frozen tissue samples.
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8

Histological Evaluation of Lymph Nodes

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For histological evaluations, lymph nodes were resected from the Man-ZW800-1 injected rats after scheduled imaging, embedded in Tissue-Tek OCT compound (Fisher Scientific, Pittsburgh, PA), and flash frozen in liquid nitrogen. Tissue was cryosectioned at 10 µm intervals and observed using a NIR fluorescence microscope. Consecutive sections were stained with hematoxylin and eosin (H&E). NIR fluorescence microscopy was performed on a 4 filter-set Nikon Eclipse TE300 epifluorescence microscope to confirm the fluorescence of lymph node as previously described [10 (link)]. The microscope was equipped with a 100 W mercury light source, NIR-compatible optics, and a NIR-compatible 4×, 10×, 20×, and 40X Plan Fluor objective lens (Nikon, Melville, NY). Custom filter sets (Chroma Technology Corporation, Brattleboro, VT) composed of 750 ± 25 nm excitation filter, 785 nm dichroic mirror and 810 ± 20 nm emission filter were used to detect the fluorescent signal in the frozen tissue samples. Images were acquired on an Orca-AG (Hamamatsu, Bridgewater, NJ) and QImaging 12-bit camera for color imaging (Surrey, BC, Canada). Image acquisition and analysis was performed using iVision software (BioVision Technologies, Exton, PA).
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9

Fluorescent Microscopy of M. xanthus

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Samples (100 µl) of M. xanthus cultures taken at an optical density of 0.1 at 550 nm were incubated, when appropriate, with the fluorescence dye 4′-6-diamino-2-phenylindole (DAPI) to achieve a final concentration of 2 ng/µl for 10 minutes. A 1 µl drop of this mixture was immobilized on 1% agarose (Pronadisa) slices prepared in TPM medium (10 mM Tris-hydrochloride pH 7.6, 1 mM KH2PO4-K2HPO4 pH 7.6, and 8 mM MgSO4). Cells were visualized with Nikon Eclipse 80i microscope equipped with a Nikon Plan Apo VC 100×/1.4 differential interference contrast (DIC) objective and a Hamamatsu ORCA-AG charge-coupled-device camera. Images were processed with Metamorph version 4.5 (Universal Imaging Group) and Photoshop CS3 10.0 (Adobe Systems). Each reported image is representative and was verified in at least three separate experiments.
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10

Time-lapse Microscopy of Live Cells

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Cells were grown in multiwell glass bottom dishes (MatTek). MCF-10A or HeLa growth medium was used during image acquisition with a layer of mineral oil on top of the medium to prevent evaporation. All images were collected with a Nikon TE2000E or Nikon Ti motorized inverted microscope equipped with Perfect Focus System for continuous maintenance of focus. The microscopes were enclosed in incubators that provided both 37°C temperature control and 5% CO2. Both microscopes were equipped with 20× Plan Apo 0.75 NA or 60× Plan Apo 1.4 NA objective lenses. Histone H2B-GFP or GFP-tubulin fluorescence was excited with a mercury halide light source using a 480/40 excitation filter (Chroma) and collected with a 535/50 emission filter (Chroma). Images were acquired with a Hamamatsu ORCA-ER cooled charge-coupled device (CCD) camera controlled with MetaMorph 7 software or Hamamatsu ORCA-AG cooled CCD camera controlled with NIS-Elements image acquisition software. Time-lapse microscopy images were collected every 3 min, using an exposure time between 100 and 200 ms, with illumination light shuttered between acquisitions. Gamma, brightness, and contrast were adjusted on displayed images (identically for compared image sets) using MetaMorph 7 software or NIS-Elements.
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