The largest database of trusted experimental protocols

5 protocols using eps15

1

Cell Signaling Pathway Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
All cell culture reagents were purchased from Gibco-Invitrogen (Carlsbard, CA, USA). Cell culture dishes and other plasticware were obtained from Nalgene Nunc (Rochester, NY, USA). Salts and buffers were purchased Sigma (St. Louis, MO, USA). Leptomycin B (LMB), α-tocopherol, LPS O111:B4 and (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) tetrazolium (MTT) were obtained from Sigma-Aldrich. Primary antibodies used in protein detection of CALM, α-adaptin, β-adaptin, eps 15, c-Myc, c-Jun, c-Abl and SR-B1 as well as secondary antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA, USA) and Abcam (Cambridge, UK). Fluorescent conjugates of LPS BODIPY FL, and 6-carboxy-2′,7′-dichlorodihydrofluorescein diacetate for ROS detection were obtained from Thermo Fisher Scientific (Waltham, MA, USA).
+ Open protocol
+ Expand
2

Immunofluorescence Staining of Clathrin and Adaptor Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used in this study for immunofluorescence staining include: clathrin heavy chain mouse monoclonal (clone X22, 1:250 dilution), AP2 α‐adaptin mouse monoclonal (clone AP6, AbCam ab2730, 1:200 dilution), clathrin heavy chain rabbit polyclonal (AbCam, ab21679, 1:1500 dilution), Eps15R rabbit polyclonal (AbCam, ab53006, 1:200 dilution), FCHo2 rabbit polyclonal (Ra103; aa 525‐890, 1:200 dilution31), Eps15 rabbit polyclonal (Ra15, aa 530‐791; 1:500 dilution62). Goat anti‐mouse and anti‐rabbit Alexa‐488, ‐546 and ‐647 conjugated secondary antibodies were used at 1:500 dilution (Life Technologies). For immunoblotting the following antibodies were used: clathrin heavy chain (BD Transduction Laboratories, #610500, 1:10 000 dilution), AP2‐β‐adaptin (clone 100/1, Sigma, A4450, 1:5000 dilution), EGFP (AbCam, ab290, 1:20 000 dilution), Flag (clone M2, Sigma, F3165, 1:2000 dilution), His (GE Healthcare, #27‐4710‐01, 1:1000 dilution), β‐actin (AbCam, ab6276, 1:10 000 dilution), Eps15 (Santa Cruz, C‐20, 1:2000 dilution).
+ Open protocol
+ Expand
3

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were resolved on either 10% Tris-glycine gels or 4–20% Novex Tris-glycine gels (Life Technologies) and transferred onto nitrocellulose or PVDF membranes. Immunoblots were probed for HGS, STAM1, TSG101, EPS15, EGFR (Santa Cruz, Dallas, TX), TrkA and TrkB (Millipore, Billerica, MA), CHMP2B (Abcam, Cambridge, MA), ERBB2, p62, LC3 (4108) and cleaved caspase 3 (Cell Signaling, Danvers, MA), mylein basic protein (Biolegend, Dedham, MA), GFAP (Dako, Carpinteria, CA) and ubiquitin (UAB Hybridoma Facility, Birmingham, AL). β-tubulin and β-actin (Developmental Hybridoma Bank, Iowa City, IA) were used for loading controls. Primary antibodies were diluted in 1X phosphate buffered saline containing 0.1% NP-40 and either 2% BSA or 1% non-fat dry milk, and proteins were detected by using an anti-mouse or anti-rabbit HRP-conjugated secondary antibody (Southern Biotechnology Associates, Birmingham, AL) and SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific, Rockford, IL).
+ Open protocol
+ Expand
4

Protein extraction and immunoprecipitation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole cell and nuclear lysates were prepared by solubilizing whole cell and nuclear pellets in RIPA buffer, respectively. For co-immuno-precipitation experiments, proteins were extracted from the nuclear pellets using high-salt buffer (19 (link)). Target proteins were either immunoprecipitated or directly detected from total lysates after SDS-PAGE using specific antibodies according to manufacturers’ instructions. Antibodies specific for Lck, CRIF1 and epidermal growth factor receptor substrate 15 (Eps15) were purchased from Santa Cruz Biotechnology. Antibodies specific for phospho-Src family (Tyr416) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-lamin B1 antibody was purchased from Abcam (Cambridge, MA, USA). Appropriate secondary antibodies conjugated with horseradish peroxidase were used to detect signals by enhanced chemiluminescence system. For signal quantitation, the bands were digitalized and analyzed by ImageJ software.
+ Open protocol
+ Expand
5

Western Blotting and Immunofluorescence Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used for Western blotting: 6D8 Dsg2 (1:100); 10D2 Dsg2 (1:100); from Invitrogen (Carlsbad, CA), cluster of differentiation 63 (CD63; 1:1000), interleukin 8 (IL-8; 1:500); from Cell Signalling Technology (Danvers, MA), early endosome antigen 1 (EEA1; 1:1000), epidermal growth factor receptor substrate 15 (EPS15; 1:1000), flotillin 1 (Flot1; 1:1000), green fluorescent protein (GFP; 1:1000), cytochrome c oxidase IV (COX IV; 1:1000), glyceraldehyde-3-phosphate dehydrogenase, (GAPDH; 1:3000); from Santa Cruz Biotechnology (Santa Cruz, CA), CD9 (1:500); from LI-COR Biosciences (Lincoln, NE), goat anti-rabbit or -mouse Odyssey 800 (1:15,000) and 680 (1:20,000). Antibodies used for immunofluorescence: 10D2 Dsg2 (1:2); Flot1 (1:100); EEA1 (1:200); EPS15 (1:200); Rab7 (1:250, Cell Signalling Technology); from Molecular Probes (Eugene, OR), goat anti-rabbit and -mouse Alexa Fluor 488 and 594 (1:400).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!