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7 protocols using p p70s6k1

1

Immunoblotting Analysis of HepG2 Cell Signaling

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HepG2 cells were harvested and boiled with a sample buffer (1 × DB). Proteins were separated by SDS-PAGE and transferred to Poly Vinylidene Di-Fluoride (PVDF) membranes. After blocking with 3% bovine serum albumin or 3% skim milk for 1 h, the membranes were incubated with a primary antibody overnight at 4 °C. After being washed with phosphate-buffered saline (PBS) containing 0.1% Tween 20, the membranes were reacted with an antimouse or rabbit IgG horseradish peroxidase-linked secondary antibody (1:10,000) for 1 h at room temperature. Membranes were washed with PBS three times and subjected to immunoblotting using SuperSignal West Pico Substrate (Thermo Scientific, Waltham, MA, USA) or ImmunoStar LD (Wako). Band intensities were quantitatively analyzed using ImageJ. The following antibodies were used: actin (sc-47778, Santa Cruz Biotechnology, Dallas, TX, USA), AMPK (#5832, Cell Signaling Technology, Danvers, MA, USA), p-AMPK (#2535, Cell Signaling Technology), ACC (#3662, Cell Signaling Technology), p-ACC (#11818, Cell Signaling Technology), p53 (sc-393031, Santa Cruz Biotechnology), p-p53 (#9284, Cell Signaling Technology), p70S6K1 (#2708, Cell Signaling Technology), p-p70S6K1 (#9234, Cell Signaling Technology), cleaved caspase-3 (#9664, Cell Signaling Technology), caspase-3 (#9665, Cell Signaling Technology).
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2

Apoptosis Pathway Regulation Assay

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WST-1 assay kit was purchased from Daeillab (Daeillab, Korea). and dihydrotestosterone (DHT) were purchased from Sigma Aldrich (Sigma Aldrich, USA). Specific antibodies such as Bcl-2, Bax, APAF-1 was purchased from Santa Cruz Biotechnology (Santa Cruz Biotechnology, USA). Specific antibodies such as t-mTOR, p-mTOR, LC3, p62 Cyclin E1, p-cdk2, t-p70 S6K, p-p70 S6K1, t-4E-BP1, p-4E-BP1 were obtained from Cell Signaling Technology (Beverly, USA). and Specific antibodies such as β-actin and Active-caspase-3 antibodies were purchased from Abcam (Cambridge, USA). Muse Cell Cycle Kit (MCH100106) and Muse Cell Analyzer (PB4455ENEU) were purchased from Millipore (EMD Millipore Corporation, Germany).
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3

Protein Extraction and Western Blot Analysis

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After different types of treatment, cells were resuspended in lysis buffer (50 mmol/L Tris-HCl, 150 mmol/L NaCl, 0.5% NP40, 1mmol/L Na3VO4, 5 mmol/L NaF, 80 mmol/L B-glycerophosphate). The Thermo Scientific T-PER Tissue Protein Extraction Reagent was used for total protein extraction from mouse mammary gland tissue. About 100 mg tissue was added in a mortar with 10 mL liquid nitrogen, ground into powder. T-PER Reagent (1 mL) was then added and ground with tissue powder. The mixture was transferred to a 1.5 mL Centrifuge tube and centrifuged at 10,000 × g for 5 minutes at 4 °C to pellet cell/tissue debris and collect supernatant protein extracts. Equivalent amounts of proteins (50 μg) were analyzed by SDS-PAGE. Appropriate antibodies to GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA), MMP9 (Invitrogen, Carlsbad, CA), p-P70S6K1 (Cell Signaling Technology, Beverly, MA), and P70S6K1 (Cell Signaling Technology, Beverly, MA) were used. Proteins were visualized with peroxidase-coupled secondary antibody from Sigma-Aldrich (Louis, MO), using Electrochemiluminescence (ECL, ThermoFisher Scientific,Grand Island, NY) solution for detection.
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4

Immunoblotting Techniques for Protein Analysis

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Immunoblotting was performed as previously described50 . To extract protein, samples (embryos or C17.2 cells) were sonicated in lysis buffer (Cell Signaling Technology) containing a protease inhibitor cocktail (Sigma). Equal amounts of protein and the Precision Plus Protein standards (Bio-Rad, Portland, ME) were resolved by SDS-PAGE and transferred onto Immobilon-P membranes (Millipore, Billerica, MA). Membranes were incubated in 5% nonfat milk for 1h and then incubated overnight at 4°C with primary antibodies at their respective dilutions. p-p70S6K1(1:1000, Cell Signaling Technology), p70S6K1(1:1000, Cell Signaling Technology), LC3(1:1000, Cell Signaling Technology), β-actin(1:10,000, Abcam, Cambridge, MA), caspase-3(1:500, Millipore), caspase-8(1:1000, Enzo Life Sciences, Farmingdale, NY), p-S6(1:1000, Cell Signaling Technology), S6(1:1000, Cell Signaling Technology). Membranes were exposed to HRP-conjugated goat anti-rabbit or goat anti-mouse (Jackson Immuno Research Laboratories, West Grove, PA) secondary antibodies. Signals were detected using the Super Signal West Femto Maximum Sensitivity Substrate kit (Thermo Fisher Scientific, Halethorpe, MD). Chemiluminescence emitted from the bands was directly captured using a UVP Bioimage EC3 system.
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5

Profiling Cellular Signaling Pathways

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All the cell culture reagents were from HyClone (Logan, UT, USA). Antibodies against Raptor (#2280S), p-Raptor (#2083S), p70S6K1 (#2708S), p-p70S6K1 (#9206S), p-4E-BP1 (#13443S), Rictor (#2114), p-Rictor (#3806S), p-GSK3β (#9336L), p-S6 (#4858S), N-cadherin (#14215S), Slug (#9585S), caspase 3 (#14220S), p21 (#2947), CDK4 (#12,790), CDK6 (#13,331), p-Rb (#9308S) were from Cell Signaling Technology. Antibodies against GSK3β (22104-1-AP) and caspase 9 (10380-1-AP) were obtained from Proteintech. Antibodies specific for S6 (sc-74,459), vimentin (sc-32,322), PARP-1 (sc-8007), Rb (sc-74,562) and Cyclin D1 (sc-20,044) were procured from Santa cruz biotechnology. Antibody against β-actin (A1978) was supplied by Sigma. Z86 was obtained as previously reported [13 (link)].
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6

Immunohistochemical Analysis of Cellular Markers

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Cultured cells were fixed with 4% paraformaldehyde. The primary antibodies that were used include GFP (Invitrogen; A10262), GFAP (Dako; Z0334), S100B (Sigma; AMAB91038), pNF-H (Millipore; MAB1592), LCN2 (Millipore; AB2267), MAP2 (Millipore; AB5622), TAU (Millipore; T9450-200UL), UBIQUITIN (Dako; Z0458), UBIQUITIN (Santa Cruz, SC-9133; for western), hSOD1 (Sigma; HPA001401), and TIA1(Santa Cruz; sc1751), P62 (Abcam, ab56416), CHAT (Millipore; AB143), LC3 (Cell Signaling, 2775), p-P70S6K1 (Thr389; Cell Signaling, 9234P), P70S6K1(Cell Signaling, 2708S), p-S6 (Ser235/236; Cell Signaling, 2211s), S6 (Cell Signaling, 2217S), Phospho-Akt (Ser473; Cell Signaling, 9271S), Akt (Cell Signaling, 4685S), Phospho-PI3K p85 ((Tyr458)/p55(Tyr199); Cell Signaling, 4228S), β-actin (Cell Signaling, 3700S), and β-tubullin (Abcam, ab6046). Secondary antibodies were obtained from Jackson ImmunoResearch. Pictures were taken with a Nikon Eclipse fluorescence microscope.
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7

Western Blot Analysis of Autophagy Markers

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Cells were lysed, and proteins were quantified using BCA reagent (Beyotime Biotechnology, Shanghai, China). Proteins (20 μg) were separated by 12% SDS-PAGE and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 5% nonfat dried milk plus 0.1% Tween 20 for 2 h at room temperature and exposed to primary antibodies diluted 1000-fold that recognize USP9x (#14898; Cell Signaling, Danvers, USA), Atg5 (#12994; Cell Signaling), Atg7 (#8558; Cell Signaling), Beclin-1 (ab207612; Abcam, Cambridge, USA), LC3II (ab192890; Abcam), mTOR (#2983; Cell Signaling), p-mTOR (#5536; Cell Signaling), p62 (#88588; Cell Signaling), p70S6K1 (#34475; Cell Signaling), p-p70S6K1 (#9204; Cell Signaling), 4E-BP1 (#9452; Cell Signaling), p-4E-BP1 (#13443; Cell Signaling), or β-actin (#3700; Cell Signaling) overnight at 4°C and subsequently washed. Following primary incubation, the membranes were incubated with a horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (1:10,000; Cell Signaling) for 1 h at room temperature. Protein bands were visualized with an enhanced chemiluminescence system (Thermo Fisher Scientific). Protein band intensities were analysed with Image-Pro Plus software (version 6.0; Media Cybernetics, Bethesda, USA) and normalized against β-actin.
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