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Taqman pcr core reagent kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The TaqMan PCR Core Reagent Kit is a set of reagents designed for use in real-time polymerase chain reaction (PCR) experiments. The kit includes all the necessary components for performing TaqMan-based quantitative PCR (qPCR) analysis, including a DNA polymerase, proprietary buffer system, and optimized reagents.

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17 protocols using taqman pcr core reagent kit

1

Heart RNA Isolation and Expression

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Heart RNA was isolated using RNeasy kits (QIAGEN, Germantown, MD), reversed-transcribed into cDNA with High Capacity cDNA Reverse Transcription kits (Applied Biosystems, Grand Island, NY), and analyzed for candidate gene expression using Taqman PCR Core reagent kits and gene-specific primer/probe sets (Applied Biosystems). Candidate gene expression was normalized to Ppia (cyclophilin) expression [20 (link)].
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2

Quantifying Gene Expression in Tissues

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RNA from heart, liver, WAT, and skeletal muscle was isolated using RNeasy kits (Qiagen, Hilden, Germany), reversed‐transcribed into cDNA with High Capacity cDNA Reverse Transcription kits (Applied Biosystems, Grand Island, NY), and analyzed for candidate gene expression using Taqman PCR Core reagent kits and gene‐specific primer/probe sets (Applied Biosystems). All data are shown as delta Ct values. Candidate gene expression was normalized to Ppia (cyclophilin) expression (Collins et al. 2009). Ppia was chosen as the reference gene since Ppia expression did not vary with diet or treatment.
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3

COMT Genotyping from Whole Blood

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A whole-blood sample was drawn into a tube containing ethylenediaminetetraacetic acid. Buffy coat was separated from the whole blood following centrifuging and mixing with 0.5 normal saline and was stored in −80°C until DNA extraction. The COMT polymorphism genotyping (Val158Met (G/A), rs4680) was conducted at the University of Minnesota Genomics Center as follows. Genomic DNA was extracted from 200 mL of buffy coat samples using the QIAGEN DNeasy Blood and Tissue Kit according to the manufacturer’s instructions (Qiagen). A TaqMan genotyping assay was defined for the COMT genotype, and the assay was performed by an Applied Biosystems TaqMan PCR Core Reagent Kit. Three control samples from Coriell cell lines were used in each run, and genotyping was successful in all DNA samples with the allelic distributions in accordance with Hardy–Weinberg equilibrium for all screened participants (P = 0.35).
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4

Quantification of Aco2 mRNA in Huntington's Disease

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Total RNA from striatum of Hdh(CAG)150 mice (heterozygous, n = 8) and WT littermates (n = 8) at 16 months of age was extracted using the Trizol (Invitrogen, Carlsbad, CA, USA), and reverse transcribed into cDNA using SuperScriptTM III reverse transcriptase (Invitrogen, Carlsbad, CA, USA). QRT-PCR was performed on a cDNA amount equivalent to 100 ng total RNA using the TaqMan PCR Core Reagent Kit and the Sequence Detection system (ABI Prism 7900, Applied Biosystems, Foster City, CA, USA). Primers (forward primer 5′-CCTAAGGACAGCAGTGGGC-3′, reverse primer 5′-CCCGATCGGACTTTGA-3′) and TaqMan probe (CTCCAGATGCAGACGAGCTT) designed by using Primer Express software, Version 2.0, Applied Biosystems were used for amplification of Aco2 cDNA. Primers Mm00446968_m1 and TaqMan probe (GGTTAAGGTTGCAAGCTTGCTGGTG) were used in QRT-PCR for Hprt1. Relative gene expressions were calculated using the 2ΔCt method, ΔCt = Ct (Hprt1) − Ct (Aco2), in which Ct indicates cycle threshold (the fractional cycle number where the fluorescent signal reaches detection threshold). Hprt1 was used as an internal control. Aco2 mRNA was measured in duplicate for each sample.
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5

Quantification of Endothelial Cell Markers

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Total RNA from cultured CACs was isolated by using an RNeasy Mini Kit (Qiagen) or RNAqueous‐Micro Kit (Ambion). cDNA was transcribed from RNA with iScript cDNA Synthesis Kit (Bio‐Rad). Real‐time polymerase chain reaction (PCR) was then performed on a sequence‐detection system (Prism 7900; Applied Biosystems) and the TaqMan PCR Core Reagent kit (Applied Biosystems). β‐Actin was used as the endogenous control to normalize the amount of cDNA added to each reaction for analysis of eNOS expression; primers were purchased from Applied Biosystems. Human β‐glucuronidase was the endogenous control for CD14, KDR, CD31, and CD45 expression; primers were purchased from Integrated DNA Technologies. PCR was performed at the Genome Analysis Core Facility, Helen Diller Family Comprehensive Cancer Center, UCSF.
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6

Quantifying ADAM Metalloproteinase Expression

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RNA from transduced Raji cells was isolated using the RNeasy Micro Kit (Qiagen). cDNA was generated using the High Capacity cDNA Reverse Transcription Kit (Applied Biosystems). For real-time PCR TaqMan® assays for ADAM10, ADAM17 (Applied Biosystems) and PrimeTime® qPCR Assays for ADAM9 and ADAM19 (Integrated DNA Technologies) were used in combination with the TaqMan® PCR Core Reagent Kit (Applied Biosystems). Cyclophilin (Applied Biosystems) expression was determined as a housekeeping gene. Samples were run in MicroAmp™ Optical 96-well reaction plates (Applied Biosystems) in a 7900HT Fast Real-Time PCR System (Applied Biosystems). Data was analysed using SDSv2.3 software (Applied Biosystems).
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7

Genotyping of ACE I/D Polymorphism

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Blood or saliva was collected from each patient, and genomic DNA was extracted by the Vanderbilt Center for Human Genetics Research DNA Resources Core using the Autopure instrument manufactured and supported by Qiagen (Valencia, CA). Genotyping of the common ACE I/D polymorphism was performed with the TaqMan PCR Core Reagent Kit (Applied Biosystems, Foster City, CA) with slight modifications to the protocol as outlined in Koh et al.21 (link) Laboratory personnel performing genotyping were unaware of the clinical status of enrolled subjects.
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8

Genetic Analysis of Conjugation Pathways

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DNA was extracted from buffy coat samples using the Qiagen DNAeasy Blood and Tissue Kit method (Qiagen Inc., Gaithersburg, MD) according to the manufacturer’s protocol. A TaqMan assay was developed for determining the COMT A/G polymorphism using a TaqMan PCR Core Reagent kit (Applied Biosystems, Foster City, CA). Forty-six known tag SNPs involved in glucuronidation and sulfation pathways were chosen for exploratory analyses of SULT1A1, SULT1E1, UGT1A1, UGT1A4, UGT1A6, UGT1A8, and UGT2B7 genes. SNP analysis was performed on Sequenom iPlex platform (Sequenom, San Diego, CA) by the University of Minnesota Genomics Center.
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9

Quantitative PCR Analysis of BCMA Expression

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Human B cells were positively selected from PBMC with CD19 MACS beads (Miltenyi Biotec) and differentiated into IgG-secreting cells by coculture with CD40L-transfected mouse L cells and recombinant human IL-21 as described above. CD27++CD38+ and CD38 cells were sorted using the BD FACS Aria cell sorting system (Becton Dickinson, Heidelberg, Germany). For quantitative PCR analysis, RNA was isolated using the RNeasy Micro Kit (Qiagen, Hilden, Germany) and cDNA was generated using the High Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Darmstadt, Germany). To detect BCMA transcripts, primer and probes were used as published41 (link). As housekeeping gene Cyclophilin A (PPIA) was used and detected with the primer and probes 43263416E from Applied Biosystems. Reactions were carried out in duplicate using TaqMan assays in combination with the TaqMan PCR Core Reagent Kit (Applied Biosystems). Samples were run in MicroAmp Optical 96-well reaction plates in a 7900HT Fast Real-Time PCR System (Applied Biosystems). Data were analysed using the SDSv2.3 software (Applied Biosystems).
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10

GJA5 Polymorphism Genotyping Protocol

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Blood or saliva was collected from each patient, and genomic DNA was extracted by the Vanderbilt Center for Human Genetics Research DNA Resources Core using the Autopure instrument (Qiagen, Valencia, CA). Genotyping of the common GJA5 missense polymorphism (rs10465885) was performed with the TaqMan PCR Core Reagent Kit (Applied Biosystems, Foster City, CA) with slight modifications to the protocol as outlined in Koh et al.12 (link) Laboratory personnel performing genotyping were unaware of the clinical status of enrolled subjects.
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