The largest database of trusted experimental protocols

30 protocols using polymorphprep

1

PBMC Isolation and RNA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
PBMC were isolated from whole blood using PolymorphPrepTM (Progen Biotechnik GmbH, Heidelberg, Germany) density centrifugation at 450 g for 40 min as previously described62 (link). PBMC were collected on the interface, transferred to a new tube and thoroughly washed. Cell numbers were assessed on a Casy1 TT instrument (Schärfe System, Reutlingen, Germany). RNA was isolated using TRIzol (Invitrogen, Carlsbad, USA) according to the manufacturer’s instructions. After precipitation, the RNA pellet was dissolved in nuclease free water and quality and concentrations were assessed on an Infinite 200 plate reader (Tecan Trading AG, Männedorf, Switzerland). Only RNA isolates with an absorbance ratio (wavelength 260 nm/280 nm) ≥ 2.0 were used in the study (isolate from 1 patient did not meet quality criteria).
+ Open protocol
+ Expand
2

Isolation and Irradiation of Murine and Human Neutrophils

Check if the same lab product or an alternative is used in the 5 most similar protocols
Murine neutrophils were isolated from bone marrow, as previously described (10 (link)). Briefly, bone marrow cells were flushed from the femur and tibia with RPMI-1640 (life technologies) +2% Fetal Bovine Serum (FBS, Life technologies). After filtration through a cell strainer (100 µm; BD Falcon, San Jose, CA, USA) and erythrocyte lysis with sterile water, the cells were incubated for 1 h at 37 °C with 5% CO2 to separate the suspended granulocytes from adherent monocytes.
PolymorphPrepTM (Progen Biotechnik) was used according to the manufacturer’s instructions, as previously described (9 (link)), to isolate human neutrophils from fresh blood.
For the irradiation assay, neutrophils were irradiated with a dose of 10 Gy using an RS-2000 X-Ray Biological Irradiator (Rad Source Technologies) after being seeded onto 24-well plates.
+ Open protocol
+ Expand
3

COVID-19 Neutrophil Isolation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neutrophil isolation: On multiple days across the hospital stay for COVID-19 subjects, and once a week for control subjects, blood was drawn into lithium heparin tubes (BD Vacutainer) with an average gap of 2.5 h to transfer time prior to neutrophil isolation -this gap was mimicked for neutrophil isolation from healthy controls. Neutrophils were isolated using Polymorphprep TM (PROGEN) per manufacturer's instructions as previously described [21] (link). Briefly, whole blood was layered on 20 ml of Polymorphprep TM in a 50 ml conical tube and centrifuged at 500 x g for 30 min at 20°C, sans brake. The granulocyte layer was collected and washed with HBSS with no calcium, no magnesium (HBSS -/-) and centrifuged at 400 x g for 10 min at 20°C. The cell pellet was resuspended in 1 ml HBSS -/-, 10 uL was cytospun and Giemsa Wright stained, and cells were counted using light microscopy and a hemocytometer. Average neutrophil purity across samples was 90%. Cells were resuspended at 2x10 6 cells/ml for functional assays.
+ Open protocol
+ Expand
4

Neutrophil Migration Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neutrophils were obtained from peripheral blood from anonymous healthy donors over a Polymorphprep (Progen) gradient according to manufacturer procedures. Neutrophil purity was assessed by flow cytometry (>95% CD15+ cells) (CD15 Monoclonal Antibody, APC, Invitrogen Cat. No. 17-0158-41). Neutrophil migration assays were performed following the protocol previously described [57] (link) with some modifications. Briefly, 2 × 105 neutrophils were added on top of the Transwell inserts (6.5 mm Transwell® with 3.0 µm Pore Polycarbonate Membrane Insert, Corning 3415) in 200 μL of complete EGM-2MV medium (Lonza, CC-3202). The lower compartment was then filled with 600 μL of conditioned medium from untreated or CL264-treated M-MØ, RPMI-10% FBS as negative control, or 50 ng/mL recombinant human IL-8 (Immunotools) in RPMI-10% FBS as positive control. Migration was allowed for 1 h and migrated neutrophils were quantified by Flow Cytometry (CytoFLEX-S, Beckman-Coulter).
+ Open protocol
+ Expand
5

Isolation and Differentiation of Macrophages

Check if the same lab product or an alternative is used in the 5 most similar protocols
Polymorphonuclear granulocytes (PMN) and peripheral blood mononuclear cells (PBMC) were isolated from peripheral blood of healthy donors by density gradient centrifugation using either Polymorphprep® (Progen, Heidelberg, DE) or Ficoll Paque Plus (GE Healthcare, Chicago, IL, USA), respectively, as previously described (19 (link), 20 (link)). PBMC were then used for generation of non-polarized (M0) macrophages as described (17 (link)). Briefly, after incubation in monocyte attachment medium (PromoCell, Heidelberg, DE) for 30 min at 37°C, cells were washed three times with PBS to dispose non-adherent cells and resuspended in X-VIVO 15 medium (Lonza, Basel, CH) supplemented with 0.5% v/v penicillin/streptomycin (Gibco, Amarillo, TX, USA). After culturing for 24 h, 50 ng/ml M-CSF (PeproTech, Rocky Hill, CA, USA) were added and refreshed every 72 h at least twice before macrophages were used in ADCP experiments.
+ Open protocol
+ Expand
6

Plasma Isolation for Cytokine Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma for cytokine analysis was collected from Sodium Heparin tube. Plasma was removed from blood separated by Polymorphprep per manufacturer’s instructions (Progen). Plasma was transferred to new microcentrifuge tubes and centrifuged at 3731×g for 5 minutes at room temperature to remove any cellular debris. Supernatant was transferred to new tubes and flash frozen in dry ice and 95% ethanol. Plasma was stored at −80C for further analysis.
+ Open protocol
+ Expand
7

Neutrophil Isolation from Fresh Blood

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neutrophils were isolated from fresh blood, as previously described [43 (link)]. In short, fresh blood was drawn from healthy volunteers by a physician and directly used for isolation. Blood was layered 1:1 on Polymorphprep solution (Progen) in a 50 mL falcon tube and centrifuged at 472× g for 30 min at RT without brake. Afterward, the monocyte and plasma layer was removed, and with a fresh plastic Pasteur pipette, the neutrophil layer was transferred to a new falcon tube, directly filled up with 1× PBS at RT, and centrifuged at 472× g for 10 min with brake. The cell pellet was treated with 5 mL sterile H2O for erythrocyte lysis for 15 s and immediately filled up with 1× PBS, maximum 2 times. After another round of centrifugation at the same settings, the cell pellet was resuspended in 1 mL RPMI at RT. Cell count was determined as stated above.
+ Open protocol
+ Expand
8

Isolation and Culture of Primary Neutrophils

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary blood-derived neutrophils were isolated from fresh blood of healthy donors by density gradient centrifugation using Polymorphprep™ (Progen Biotechnik) as previously described [19 ]. DNA was isolated with the NucleoSpin Blood™ kit (Macherey-Nagel) according to the manufacturer’s recommendation. For in vitro NET assays, the cells were seeded on poly-L-lysine-coated glass slides in 24-well plates at a concentration of 5 × 105 cells/well (250μl/well) or on 48-well plates at a concentration of 2 × 105 cells/well (100μl/well). RPMI without phenol red (PAA) was used for cultivation of the cells at 37°C and 5% CO2.
+ Open protocol
+ Expand
9

Quantifying Neutrophil Killing of Opsonized Bacteria

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human neutrophils were isolated from human blood using PolymorphPrep™ (PROGEN Biotechnik GmbH, Heidelberg) according to the instructions of the manufacturer. The neutrophils were suspended in RPMI 1640 (Invitrogen, Thermo Fisher Scientific, Darmstadt, Germany). Bacteria were grown over night and washed with PBS. For opsonization 107 CFU/ml were incubated for 20 min with 10% human serum at room temperature. The opsonized bacteria were incubated with 107 human neutrophils/ml (1:1) and 5% serum for another 30 min at 37 °C. As a reference, a sample of the opsonized bacteria was incubated without neutrophils. To determine the survival rate, the samples were centrifuged and the pellets lysed in sterile distilled water. The counts of viable GAS were determined following serial dilution and plating on THY agar. To determine the proportion of extracellular bacteria, the samples were centrifuged for 5 min at 100 g for separation. The supernatant was collected, centrifuged at 13.000 g, and the bacterial pellet was dissolved in PBS.
+ Open protocol
+ Expand
10

Isolation of Human Neutrophils

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents were filtered through Detoxi-Gel Endotoxin Removing Gel Columns (Thermo Fisher Scientific) prior to neutrophil isolation. Human neutrophils were isolated using a density-gradient separation method (Ostrowski et al., 2020 (link)). Briefly, 30 ml of blood was collected in sterile BD Vacutainer EDTA (BD Biosciences, Mississauga, ON, Canada) tubes and layered on the top of PolymorphPrep (Progen, Wayne, PA, USA) in a 1:1 ratio. The layered mixture was spun at 500 g (acceleration 1 and deceleration 0) for 30 min to separate polymorphonuclear neutrophils (PMN) from mononuclear cells. PMN were washed with Hank’s balanced salt solution with calcium and magnesium (HBSS+/+; Wisent) and then subjected to red blood cell lysis using 0.2% NaCl followed by 1.6% NaCl for 30 s each. Neutrophils were resuspended in HBSS+/+ and used within 1 hr for all experiments.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!