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6 protocols using rabbit anti mouse cleaved caspase 3 antibody

1

Quantification of Apoptosis and T-cell Infiltration in Tumor Sections

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Tumor sections (three for each tumor) were stained with hematoxylin-eosin (HE) as described (36 (link)). HE stained tumor tissues were examined with a microscope at 400 × magnification.
Tumor sections (five for each tumor) were immunostained with antibodies for cleaved caspase-3 and CD3 expression. Rabbit anti-mouse cleaved caspase-3 antibody and rabbit anti-mouse CD3ε antibody (1:200 dilution) were purchased from Cell Signaling Technology (Danvers, MA, USA). The sections were treated with antigen retrieval solution followed by 3% hydrogen peroxide treatment, blocked with 5% goat serum, incubated with primary antibody and with biotin-labeled secondary antibody (goat anti-rabbit; 1:1,000 dilution; Abcam, Cambridge, UK). The stained tissues were visualized by using the DAB chromogen (Abcam) reagent and counterstained with hematoxylin. For quantification of immunohistochemical staining, positive cell percentages were counted in five random 400 × microscopic fields for each tissue section.
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2

Hepatic Protein and RNA Isolation

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Isolation of total hepatic protein and RNA from snap-frozen liver tissue samples was performed as previously described (Berres et al., 2010 (link)). After SDS gel electrophoresis and wet blotting of total protein, cleaved caspase-3 protein was detected by a rabbit anti-mouse cleaved caspase-3 antibody (Cell Signaling) followed by horseradish peroxidise-conjugated anti-rabbit IgG (DAKO) and ECL substrate (Thermo Fisher Scientific). β-Actin was used as loading control. Intrahepatic and serum PF4 concentrations were determined using a murine ELISA kit (R&D Systems) following the manufacturer’s instructions. Quantitative RT-PCR (RT-qPCR) was carried out for TGF-β, TNF-α, IL-6, IL-10, and KC with Assays-on-Demand (Applied Biosystems). β-Actin was used as reference gene.
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3

Apoptosis Detection in Thymus Sections

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Paraffin-embedded thymus sections were stained with rabbit anti-mouse cleaved caspase-3 antibody (Cell Signalling). Apoptotic cells were detected by DAB staining after treatment with the immunoperoxidase Vectastain ABC system (Vector Laboratories).
Thymocytes from P3 mice were stained with PE-labeled Annexin V and 7-AAD according to the manufacturer’s instructions (BD Pharmingen Apoptosis Detection Kit). T cells were additionally stained for anti-CD4-FITC and anti-CD8-APC and analysed by FACS.
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4

Protein Expression Analysis in Frozen Tissues

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Animal were euthanized, and organs quickly frozen in liquid nitrogen. Tissue powders were suspended in NP-40 lysis buffer supplemented with complete protease inhibitor cocktails (Roche Diagnostics) and incubated at 4°C for 45 minutes with vortex every 15 minutes. Tissue lysates were then centrifuged, and the supernatants were quantified for protein concentration by Bradford method. Tissue proteins were fractionated by sodium dodecyl sulfate polyacrylamide gel electrophoresis under reducing conditions and blotted with rabbit anti-mouse cleaved cas-pase-3 antibody (Cell Signaling, Danvers, MA). Horseradish peroxidase (HRP)–conjugated anti-rabbit IgG (Cell signaling) was used as the secondary antibody. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein was served as protein loading control. Bands were visualized using Luminata Forte Western HRP substrate (Millipore, Billerica, MA).
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5

Quantitative Analysis of Cleaved Caspase-3 in AML12 Cells

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After treatments, AML12 cells were collected with a scraper in cell lysis buffer (containing phosphatase and protease inhibitors). Lysed cells were centrifuged at 20000 g for 20 min and total protein in the supernatant was determined using the Bradford Assay (Sigma, USA). Protein (60 μg) from each sample was electrophoresed on 12.5% sodium dodecyl sulfate–polyacrylamide gels and transferred onto PVDF membranes (Bio-Rad, USA). After blocking with 5% skimmed milk, membranes were incubated with rabbit anti-mouse cleaved caspase-3 antibody (1:1000; Cell Signaling, USA) overnight at 4 °C with gentle shaking. The following day, membranes were washed with PBST (1X) three times for 10 min each and incubated with goat anti-rabbit HRP antibody (1:5000; Cell Signaling) for 60 min with gentle shaking at room temperature. After washing with 1X PBST (three times for 10 min each), blots were developed using chemiluminescence reagent (Bio-Rad, USA) on an autoradiography film (Genesee Scientific, USA). To confirm equivalent loading, blots were stripped and re-probed with goat anti-rabbit β-actin antibody (1:5000; Cell signaling, USA). Scanned images of blots were used to quantify protein expression using NIH ImageJ software (http://rsb.info.nih.gov/ij/).
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6

Western Blotting of Stress Markers

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Western blottings were performed as previously described26 (link) using the following: a goat anti-mouse LCN2 antibody (R&D systems) at 1:1,000, a rabbit anti-mouse CHOP antibody (Santa Cruz Biotechnology) at 1:500, a rabbit anti-mouse p-c-JUN antibody (Cell Signaling Technology) at 1:1,000, a rabbit anti-mouse pPERK antibody (Cell Signaling Technology), a rabbit anti-mouse ATF4 antibody (Santa Cruz Biotechnology) at 1:500, a rabbit anti-mouse p-eIF2α antibody (Cell Signaling Technology) at 1:1,000 and a rabbit anti-mouse cleaved caspase 3 antibody (Cell Signaling Technology) at 1:1,000, followed by either a rabbit HRP-conjugated anti-goat antibody at 1:10,000 (Dako) or a donkey HRP-conjugated anti-rabbit antibody at 1:10,000 (Amersham). Mouse monoclonal anti-α-tubulin or anti-β-actin antibody (Sigma) was used as loading control. The uncropped versions of western blottings are shown in Supplementary Fig. 15.
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