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Econo pac

Manufactured by Bio-Rad
Sourced in China, United States

The Econo-Pac is a benchtop chromatography system designed for rapid and efficient purification of biomolecules. It features a simple user interface and automated sample loading, fraction collection, and system control capabilities.

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7 protocols using econo pac

1

His-tagged Protein Purification Protocol

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Wildtype sequences with N-terminal His-tags were cloned into T7 expression vectors via MoClo. Chemically competent BL21-DE3 (New England Biolabs) were transformed and plated on LB agar supplemented with antibiotic and 20 µM IPTG, grown overnight at 30°C and left at room temperature an additional day to allow extensive time for fluorescent protein maturation. Colonies from twenty 12 × 12 cm plates were scraped and recovered in 40 ml of binding buffer (500 mM NaCl, 20 mM Tris-HCl, 25 mM imidazole, pH 8), lysed in a Qsonica Q700 sonicator (20 kHz, amplitude 10, 1 s on/4 s off, 20 min of active sonication time), and centrifuged for 30 min at 20,000 g. The supernatant was recovered and incubated with rotation for 1 hr at 4°C with 3 ml of nickel-sepharose protein purification resin (Cytiva). Before use, resin was washed with 5 volumes of binding buffer, and 5 volumes of distilled water.
After incubation, the protein/resin solution was passed through an empty chromatography column (BioRad Econo-Pac), washed thrice with 20 ml of binding buffer, then protein was recovered in 2–5 ml of elution buffer (500 mM NaCl, 20 mM Tris-HCl, 500 mM imidazole, pH 8).
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2

Isolation of HDL Subspecies by Affinity Chromatography

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0.1mL of the HDL isolate was loaded into each of 16 different 5mL Econo-Pac chromatography columns (Bio-Rad Laboratories, Hercules, CA), one per HDL subspecies to be isolated. These columns contained 0.5mL of resin bound to antibody to one of the 16 proteins defining the HDL subspecies of interest (0.1mg of antibody per 1mL of resin). The details of these antibodies are described in Supplemental Table III(Major Resources Table) of the online supplement. HDL was incubated for 16 hours at 4°C with gentle swirling. The unbound HDL that lacked the subspecies-defining protein of interest were eluted by gravity flow washing 3 times with 0.2 mL PBS. Bound fractions were eluted by washing 3 times with 0.2 mL of 3M NaSCN followed by a single wash with 0.2 mL of PBS. Sodium thiocyanate was immediately removed by buffer exchange to phosphate buffered saline and both the bound and unbound fractions were restored to the initial load volume of 0.1mL.
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3

Transient Expression of Monoclonal Antibodies in HEK293-F Cells

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For laboratory-scale expression of mAbs, plasmids bearing chimeric antibody heavy and light chain genes were prepared (EndoFree plasmid mega prep kit; Qiagen) and transfected into human embryonic kidney cells (HEK293-F) (Life Technologies) using polyethylenimine (PEI). Transfections were carried out using 1 mg of total DNA (500 μg each of VH and Vκ plasmid DNAs) and 1 L of the cultured HEK293-F cell suspension maintained in sterile Freestyle 293 expression medium (Invitrogen) without antibiotics at 37°C with 8% CO2, with shaking at 125 rpm. The transfected cells were grown for 8 days and purified using ProSep A beads (Millipore) and Econo-Pac chromatography columns (Bio-Rad). Recombinant mAbs were eluted in 100 mM glycine (pH 3.0) before neutralization with 1 M Tris-HCl (pH 8.0). Purified mAbs were quantified by SDS-PAGE and A280 measurements.
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4

Purification of Membrane-bound CybB Proteins

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Membranes were thawed and solubilized in 1% OGNG (Octyl Glucose Neopentyl Glycol) (Anatrace) for 2 hours. Insoluble material was cleared by ultracentrifugation for 30 min. at 40.000 rpm in a Beckman Ti70.1 rotor. The supernatant was incubated at 4°C with Ni2+-charged Profinity (Bio-Rad) IMAC resin for 2 h with gentle rotation (5 mM Imidazole was added after 1 h of incubation). The sample was loaded on a Econo-Pac disposable gravity flow column (Bio-Rad). The settled resin was washed with 15 CV IMAC wash buffer 1 (10 mM HEPES pH 7.0, 200 mM NaCl, 50 mM Imidazole, 5% glycerol, 0.1% OGNG) and 15 CV wash buffer 2 (10 mM HEPES pH 7.0, 200 mM NaCl, 5% glycerol, 0.1% OGNG). CybB/CybBSeMet was eluted with 3x 0.75 CV elution buffer (10 mM HEPES pH 7.0, 200 mM NaCl, 100 mM EDTA, 5% glycerol, 0.1% OGNG), concentrated to 0.5 ml using Vivaspin concentration devices with 50 kD cutoff (Sartorius) and subjected to size exclusion chromatography (10 mM HEPES pH 7.0, 200 mM NaCl, 5% glycerol, 0.1% OGNG) on a 30 ml BIOSEP-SEC-S3000 column (Phenomenex) connected to a Shimadzu Prominence HPLC system. Fractions representing the CybB/CybBSeMet peak were pooled, concentrated to 10-12 mg/ml (CybB) and 11 mg/ml (CybBSeMet) with 50 kD concentrator cut-off, and flash-frozen in liquid nitrogen.
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5

Purification and Standardization of Schistosoma Multiepitope Antigen

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The inclusion bodies were solubilized (6 m GuHCl, 0.2 m NaCl, 11.5 mm NaH2PO4, 10 mm Tris, 10 mm BetOH, pH 7.8) and harvested by centrifugation at 10 900 g for 30 min at 4 °C. The pellet was resuspended in buffer solubilization and incubated with Ni Sepharose high-performance resin (GE Healthcare Life Sciences, Uppsala, Sweden) for 1 h at 4 °C. The resin was collected by centrifugation at 1360 g for 5 min and the recombinant protein was purified in Econo-Pac® chromatography columns (Bio-Rad Laboratories), according to the manufacturer's instructions, using elution buffer (10 mm phosphate buffer, 8 m urea, 10 mm imidazole, 10 mm BetOH, pH 4.3). Purified P1–P5 antigen were subjected to successive dialysis against elution buffer, containing 6 m, 4 m and 2 m urea for 3 h in each buffer at 4 °C. Then, the antigen was dialysed in a dialysis sack (molecular weight cut-off 12 000 Da, Sigma-Aldrich) against phosphate-buffered saline (PBS, 2.1 mm NaH2PO4, 8.3 mm Na2HPO4, 0.15 m NaCl, pH 7.3), also for 3 h, at 4 °C. Lastly, P1–P5 antigen were recovered, and the protein concentration was determined by the colorimetric bicinchoninic acid method (Thermo Fisher Scientific). The multiepitope antigen (P1–P5) was used to standardize an enzyme-linked immunoassay, named ELISA IgG anti-SmME (ELISA-based immunoenzymatic test, using a Schistosoma mansoni multiepitope antigen).
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6

PpABF3 Protein Purification and EMSA

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PpABF3 CDS was inserted into the pET-32a vector for protein induction. The vector was delivered into E. coli strain BL21 for in-vitro induction with isopropyl-β-d-thiogalactopyranoside overnight at 16°C. The protein was purified with nickel-nitrilotriacetic acid (Ni-NTA) Sefinose Resin (Sangon Biotech, China) and Econo-Pac disposable chromatography columns (Bio-Rad). Custom-synthesized DNA fragment (20 pmol, 5′-AAATCCAACATTGCCACGTGTCCTGGTAGATGACAGTTTCCCAAGTAGCT-3′) was annealed and labeled with Biotin at the 3′ (Genebio, China). Double-stranded DNA probes were prepared as previously described (Bai et al. 2019b ). According to EMSA/gel-shift kit (Beyotime, China), an EMSA was performed. Briefly, doublestranded DNA probes were incubated with purified recombinant His-PpABF3 at room temperature. After 0.5 h incubation, the detection of biotin-labeled probes was performed using an antibiotin antibody as described by Bai et al. (2019b) .
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7

Liposomal Stability Evaluation

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Liposomes stability on storage was evaluated in freshly prepared liposomal suspensions under different conditions: at 4 °C for 90 days and at 37 °C for 48 h, in citrate buffer (10 mM citrate buffer, 145 mM NaCl, pH 6.0) with or without 1% (w/v) bovine serum albumin (BSA—Merck, Darmstadt, Germany). Aliquots were collected, non-encapsulated drug was removed by size exclusion chromatography using a desalting column of 1000 Dalton cutoff (Econo-Pac®, BIO-RAD, Hercules, CA, USA), and a complete characterization of stable liposomes was repeated.
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