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6 protocols using sybr green pcr mix

1

Quantitative gene expression analysis

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Total RNA was extracted using Trizol A + (Tiangen, Beijing, China) and reverse-transcribed into cDNA. Expressed genes were amplified in triplicate and quantified by PCR using a SYBR Green PCR Mix (B21702, Bimake, China) with the Roche LightCycler system. Data was analyzed using the 2–ΔΔCT method. The primer sequences used for quantitative PCR (qPCR) are provided in Supplementary Material 1.
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2

Quantitative Analysis of Inflammatory Genes in Mouse Livers

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Total RNA was extracted from mouse livers using Trizol® reagent (Thermo Fisher). cDNA was synthesized by Maxima H minus reverse transcriptase (Thermo Fisher). qRT-PCR was performed on a BioRad CFX384 real-time PCR system (Bio-Rad) using SYBR Green PCR mix (Bimake). The expression levels of Tnfa, Il1b, Mip1a, Mip1b, Mcp1 and Mip2 were quantified and Atcb was used as an internal control. The fold change of mRNA was expressed as 2-∆∆Ct. The primers were listed in Table 1.
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3

Quantitative RNA Expression Analysis

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Total RNA from HUVECs was isolated using TRIzol Reagent (Ambion, Texas, USA), and then the RNA (1 μg) was reverse transcribed into cDNA using RevertAid™ Master Mix (M1631; Thermo Scientific, Waltham, MA, USA) according to the manufacturer's protocol. Quantitative PCR (qPCR) was performed using SYBR Green PCR Mix (Bimake, Texas, USA) in a real-time PCR detector (Bio-Rad, CA, USA). The primer sequences used are listed in Supplemental Table S1, and the commercial β-actin primer was obtained from Sango Biotechnology (Shanghai, China). Each sample was tested in triplicate, and β-actin was used as an internal control.
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4

Total RNA Extraction and RT-qPCR Analysis

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Total RNA was extracted from cells using TRIzol regent (#335904; Invitrogen Corp., Carlsbad, CA, USA), and RNA was reverse transcribed to complementary DNA (cDNA) using a GoScript RT Reagent Kit (#A5001; Promega Corp., Fitchburg, WI, USA). We performed RT‐qPCR using a QuantStudio 6 Flex RT‐qPCR System (Applied Biosystems, Foster City, CA, USA) with SYBR Green PCR Mix (#B21703; Bimake, Houston, TX, USA). All RT‐qPCR primers are listed in Table S1.
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5

Quantitative Analysis of Gene Expression

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Total RNA was extracted using an RNA extraction kit (TIANGEN, Beijing, China) and reverse-transcribed into cDNA using an iScript cDNA synthesis kit (TaKaRa, Tokyo, Japan). The primers used are listed in Table 1. The real-time polymerase chain reaction was performed using SYBR Green PCR mix (Bimake, San Francisco, CA, USA) in a real-time PCR apparatus (Bio-Rad, Hercules, CA, USA). GAPDH was used as an internal control. The accession numbers are as follows: p53 NM_030989.3, p21 U24174.1, p16 L81167.1, and GAPDH NM_017008.4.
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6

RNA Extraction and RT-qPCR Analysis

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Total RNA was meticulously extracted from cultured cells using the AxyPrep Multisource RNA Miniprep Kit (Axygen, Corning, New York, USA). Briefly, after cell lysis, we performed centrifugation and washing steps using various reagents from the kit. Finally, we added TE buffer to dissolve the RNA, followed by centrifugation to obtain the RNA liquid sample. The synthesis of complementary DNA (cDNA) was conducted via reverse transcription using TaKaRa reverse transcription reagents (TaKaRa, Shiga, Japan). Subsequently, RT-qPCR assays were carried out utilizing the QuantStudio 6 Flex RT-qPCR System (Applied Biosystems, CA, USA) in conjunction with SYBR Green PCR Mix (Bimake, TX, USA). The detailed primer sequences are shown in Additional file 1: Table S1. In this experiment, NP cells were subjected to different treatments as required by the experimental demands, as detailed in the Results section.
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