The largest database of trusted experimental protocols

6 protocols using pcmv 3tag 7

1

Plasmid Cloning and Mutagenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
FLAG-TRAF6 (21624), FLAG-HA-USP15 (22570), and FLAG-BECN1 (24388) plasmids were purchased from Addgene. HA-tagged Ub plasmids were obtained from Dr. J. H. Shim (University of Massachusetts Medical School, USA). Using the FLAG-HA-USP15 plasmid, full-length FLAG-USP15 and MYC-USP15 constructs were cloned into a pCMV-3Tag-7 (Agilent technologies, 240202) or a pCMV-3Tag 6 vector (Agilent technologies, 240200). Using FLAG-BECN1, the full-length MYC-BECN1 construct was cloned into a pCMV-3Tag-7 vector (Agilent Technologies, 240202). Truncated mutants of MYC-BECN1 were generated as previously described [10 (link), 20 (link)–23 (link)]. MYC-USP15 C269A and MYC-USP15 H862A mutants were generated by site-directed mutagenesis as previously described [24 (link)].
+ Open protocol
+ Expand
2

Generation of FLAG-AQP0 and Myc-AQP0 Fusion Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
To create FLAG-AQP0 and Myc-AQP0 fusion proteins, the PCR products of WT-AQP0 and Y219*-AQP0 were digested with BamHI and XhoI restriction enzymes, respectively, purified with a PCR purification kit (Tiangen Biotech, Beijing, China), and subsequently cloned into the digested mammalian expression vector, pCMV-3Tag-6(Agilent Technologies, Shanghai, China), which contained an N-terminal triple FLAG epitope tag;and pCMV-3Tag-7 (Agilent Technologies, Shanghai, China), which contained an N-terminal tripleMyc epitope tag. All of the constructs were verified by direct sequencing.
+ Open protocol
+ Expand
3

Cell Line Characterization and Genetic Engineering

Check if the same lab product or an alternative is used in the 5 most similar protocols
All cell lines (Bxpc-3, MIAPACA-2, PANC-1 and NIH3T3) were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). Except for the Bxpc-3, which was cultured in RPMI 1640 medium (Invitrogen, Carsbad, CA, USA), all other cell lines were incubated in DMEM medium (Invitrogen) supplemented with 10% fetal bovine serum at 37°C with 5% CO2 and 95% humidity. Antibodies for ING4 and JMJD3 were bought from Abcam. Anti-TDG antibody was from Santa Cruz and anti-Fas, GAPDH, tri-methyl-H3K27, cleaved-Caspase3 and PARP were from Cell Signaling Technology (Boston, MA, USA). All chemical inhibitors were bought from Sigma. K-Ras (1-688bp) full length open reading frame (ORF) was amplified by PCR using the GoTaq Green Master Mix (M7123, Promega, Madison, WI, USA) with cDNA reversing transcription from total RNA of PNAC-1 cells. The primers used were listed in Table 1. The PCR products were cloned into the pGEM-T Easy Vector (Promega, Madison, WI, USA). After sequence verification, the inserts were sub-cloned using BamHI and XhoI restriction sites into a mammalian expression vector pCMV-3Tag-7 (Agilent, La Jolla, CA, USA).
TDG (1-1233bp) and ING4 (1-747bp) full length ORF inserted into neomycin resistant mammalian expression vector EX-Z4461-M14 was purchased from GeneCopoeia (Rockville, MD, USA). H-Ras (Q61L) cDNA was purchased from Upstate (Lake Placid, NY, USA).
+ Open protocol
+ Expand
4

Plasmid Construction and Modification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flag-TRAF6 (21624) and Flag-BECN1 (24388) plasmids were purchased from Addgene (Cambridge, MA 02142, USA). HA-tagged Ub plasmids were obtained from Dr. J. H. Shim (University of Massachusetts Medical School, USA). Using the Flag-TRAF6 or Flag-BECN1 plasmid as templates, full-length TRAF6 and BECN1 were cloned into pCMV-3Tag-7 (Agilent technologies, 240202) to generate Myc-TRAF6 and Myc-BECN1, respectively. Beta Arrestin 2/ARRB2 cDNA ORF Clone (HG15078-CF) was purchased from Sino Biological US Inc. (Wayne, PA, USA). ARRB2 full length was cloned into a pCMV-3Tag 6 vector (Agilent technologies, 240200) to generate Flag-ARRB2. Truncated mutants of Flag-TRAF6 and Flag-BECN1 were generated as previously described [25 (link), 26 (link)].
+ Open protocol
+ Expand
5

Molecular Interactions of Flag-Tagged Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flag-tagged TRAF6 (Ca# 21624), Flag-tagged CRBN (Ca# 107380), and Flag-tagged BECN1 (Ca# 24388) were purchased from Addgene, Cambridge, MA, USA. Expressing vectors, such as Myc-tagged ECSIT, HA-tagged Ub, and Flag-tagged ECSIT, were obtained from Jae-Hyuck Shim (University of Massachusetts Medical School, USA). Full-length TRAF6 and CRBN were cloned into the pCMV-3Tag-7 vector (Ca# 240202, Agilent technologies) using Flag-tagged TRAF6 and Flag-tagged CRBN, respectively, as a template. Myc-tagged CRBN were used as vector backbone to generate Myc-tagged CRBN 1-261 and Myc-tagged CRBN 1-186 truncated mutants using the primers: Myc-tagged CRBN 1-261: forward primer, 5′-ATAGGATCCATGGCCGGCGAAGGAGAT-3′; reverse primer, 5′-GGCCTCGAGTCATAGCTGTTTCTTGATTCTGTC-3′; Myc-tagged CRBN 1-186: forward primer, 5′-ATAGGATCCATGGCCGGCGAAGGAGAT-3′; reverse primer, 5′-GGCCTCGAGCTAGGGAAGAATTTGCACTTT-3′. Flag-tagged ECSIT truncated mutants were generated as previously described (24 (link)).
+ Open protocol
+ Expand
6

Constructs for TRAF6, BECN1, Vps34, Bcl-2

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flag-TRAF6 (21624), Flag-BECN1 (24388), HA-Vps34 (86749), and Flag-Bcl-2 (18003) were purchased from Addgene (Cambridge, MA, USA). HA-HBx and Flag-HBx were obtained from Dr. K-H. Kim (Sungkyunkwan University School of Medicine). HA-Ub plasmids were obtained from Dr. J. H. Shim (University of Massachusetts Medical School, USA). Using Flag-BECN1 plasmid, full-length Myc-BECN1 constructs were cloned into a pCMV-3Tag-7 (240202; Agilent technologies, Santa Clara, CA, USA). Using Flag-BECN1 wild type (WT) plasmid, Flag-BECN1 truncated mutants, Flag-BECN1 1-269 and Flag-BECN1 1-127, were generated by PCR (Polymerase Chain Reaction). HA-Vps34 truncated mutants, HA-Vps34 1-531 and HA-Vps34 1-260, were generated by PCR using HA-Vps34 WT plasmid.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!