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66 protocols using pentane

1

Dewatered DSS Feedstock Characterization

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The dewatered DSS feedstock used in this study was provided by Bergen Water and their biogas facility in Norway. The DSS was used as received with no drying or homogenisation, hence there is a risk of a certain degree of inhomogeneity in the batches used for each experiment.
Ethyl acetate (EtOAc, > 99.5%), ethanol (absolute, 99.96%), formic acid (> 98%), sodium sulphate (  99.0%, anhydrous), dodecane (analytical standard), benzoic acid (  99.5%), pyridine (  99.5%), N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA) w/1% trimethylchlorosilane (TMCS)) and pentane (  99%) were purchased from Merck (Saint-Louis, MO, USA) and used without further purification.
The oil yields are calculated by mass of oil produced relative to input mass of dry, organic feedstock. The energy recovery in the bio-oil is calculated relative to the organic matter input in the DSS. As formic acid does not contribute significantly to the oil yield31 (link), this input is not included in the yield calculations. When ethanol is included in the reaction medium, it can react with specific hydroxyl substituents32 (link) or in esterification of carboxylic acids. However, such contributions were not included in the yield calculations due to challenges in quantification, and this gives an unknown uncertainty in the recovery values for the different systems.
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2

Volatile Compound Extraction from Dittrichia vermicularis

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The hydrodistillation (HD) procedure was obtained in a modified Clevenger apparatus for 2 h. Diethyl ether (J.T. Baker Inc., NJ, USA) and pentane (Fluka, Merck KGaA, Germany) were used as the solvent trap in a v/v ratio of 2:1 (1 mL). HD was performed separately on the prepared samples of fresh and air-dried D. vermicularis. The volatile oil dissolved and trapped in the solvent trap was carefully removed with a pipette avoiding taking the water part. It was then slowly concentrated by the gentle flow of nitrogen until the volume of 0.2 mL was reached. An amount of 2 µL of the sample was used for GC–MS analyses. HD was performed in triplicate.
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3

Ant Mimic Creation with Cuticular Hydrocarbons

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Ant mimics were created by extracting cuticular hydrocarbons from ants and transferring them to 2 mm glass beads (Fisher Scientific). Cuticular hydrocarbons were extracted using standard methods [33 (link)–35 ]. Surface lipids were extracted from thawed ants that were killed by freezing at -20°C, by soaking them in 1 mL of 100% pentane (Aldrich Chemicals) for 10 minutes with periodic shaking. Long-chain hydrocarbons are unreactive and not susceptible to evaporation in storage; freezing does not significantly cause quantitative or qualitative changes in cuticular hydrocarbon profiles compared to fresh samples. Cuticular hydrocarbons were separated from more polar surface lipids by eluting extracts with 2 mL of 100% pentane through a 2 cm column of silica gel (Merck; grade 60, 70–230 mesh, 60Å) in a 5.75 inch glass Pasteur pipette. The extracts were added to a glass tube containing 2 mm glass beads equal in number to the ants extracted. The solvent was allowed to evaporate thus transferring one ant-equivalent of purified cuticular hydrocarbons from ants to each ant mimic.
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4

Peptide Characterization by Mass Spectrometry

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The quality of all chemicals was of analytical grade, unless stated otherwise. Disodium hydrogen phosphate dihydrate, ethanol, formic acid (FA; 98–100%), hydrochloric acid (32%, w/w), pentane, 1-propanol, potassium dihydrogen phosphate, sodium chloride, tris(hydroxymethyl)-aminomethane (TRIS), and urea were purchased from Merck (Darmstadt, Germany). IDAM was from Applichem (Darmstadt, Germany). α-Chymotrypsin (from bovine pancreas, TLCK-treated, ≥40 U/mg protein), pepsin (from porcine gastric mucosa, 3200–4500 U/mg protein), TCEP, trifluoroacetic acid (TFA; 99%), and trypsin (from bovine pancreas, TPCK-treated, ≥10 000 BAEE U/mg protein) were obtained from Sigma-Aldrich (Steinheim, Germany), and deuterated methanol-d4 containing tetramethylsilane (TMS) was from Euriso-Top (Gif sur Yvette Cedex, France). The peptide LQLQPFPQPQLPYPQPQLPYPQPQPLPYPQPQPF (33-mer) and the isotopically labelled peptide LQLQP*FPQPQLPYPQPQLPYPQPQLPYPQ*PQ*P*F (*33-mer) with *P: L-[13C5][15N]-proline and *F: L-[13C9][15N]-phenylalanine, were purchased from Genscript (Hongkong, PR China) with a purity of >90%. Water for HPLC was purified using an Arium 611VF water purification system (Sartorius, Goettingen, Germany).
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5

Headspace Analysis of D. dichotoma

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HD of the samples of D. dichotoma was performed separately for fresh (ca. 50 g) and dry samples (ca. 20 g). Modified Clevenger apparatus was used with the pentane (Fluka, Merck KGaA, Darmstadt, Germany) and diethyl ether (J.T. Baker Inc., Bridgewater, NJ, USA) in v/v ratio 1:2 (3 mL) as the solvent trap. After 2 h, the solvent trap containing dissolved VOCs was removed with a pipette, passed through the layer of MgSO4 in a small glass funnel and slowly concentrated by the slow flow of nitrogen until 0.2 mL. 2 µL was used for GC-MS analyses.
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6

Automated Odor Delivery for Fly Antenna

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Odours were applied automatically using a computer-controlled autosampler (PAL, CTC Switzerland). 2 ml of headspace was injected in two 1 ml portions at time points 6 s and 9 s with an injection speed of 1 ml/s into a continuous flow of purified air flowing at 60 ml/min. The 1 s stimulus was directed onto the antenna of the fly via a Teflon® tube (inner diameter 1 mm, length 38 cm).
Experiments were performed double-blind. The seven test odours (healthy control, medium control, canc1, canc2, canc3, canc4, canc5) were measured in random order. Reference odours (1-butanol and N2) were measured before and after a full block of test odours in order to ensure reproducibility and viability of the preparation (1-butanol), and to exclude contamination of the system (N2). The autosampler syringe was flushed with purified air for 1 min after each injection and washed with pentane (Merck, Darmstadt, Germany) automatically after each application of 1-butanol.
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7

Pesticide Detection via Sensor Array

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All compounds used in this study were in the analytical grades. The studied pesticides were malathion, parathion, paraoxon, dichlorvos, trichlorfon, carbaryl, pirimicarb, carbofuran chlorpyrifos, and diazinon. These materials and other chemicals, including cysteamine (Cys), tyrosine (Tyr), and tannic acid (TA), were purchased from Sigma Aldrich. Ethanol, methanol, 1-hexanol, hexanal, heptanal, benzaldehyde, triethylamine, amylamine, benzylamine, pyridine, aniline, ammonia, benzene, toluene, p-xylene, acetic acid, isobutyric acid, phosphoric acid, pentane, hexane, heptane, dimethylphenylphosphine, silver nitrate (AgNO3), gold (III) chloride trihydrate (HAuCl4·3H2O), sodium borohydride (NaBH4), boric acid, tris-hydroxymethyl methane (Tris), sodium hydroxide (NaOH), and hydrochloric acid (HCl) were obtained from Merck Chemical Company. Whatman Grade No. 2 filter paper was used as a sensor array substrate.
The standard solution of pesticide with a concentration of 30.0 µg mL−1 was made in ethanol. This solution was diluted by deionized water to prepare the pesticide solution with lower concentrations. The buffer was provided by dissolving a desirable amount of Tris or boric acid in a certain volume of deionized water. The pH of the buffer was adjusted at a specified value by adding drop by drop of NaOH and HCl solution (1.0 M).
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8

Quantification of Grape Polyphenols

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L-Glutathione (reduced), glutathione oxidized, L-methionine, trans-2-hexenal, acetonitrile, sodium borohydride (NaBH4), ethanol, N-(tert-butoxycarbonyl)-L-cysteine (Boc-Cys-OH), triethylamine, sodium sulfate, triethylsilane, trifluoroacetic acid, 4-methylpent-3-en-2-one (mesityl oxide), mesityl oxide-d10, sodium carbonate, acetic acid, hydrochloric acid, (+)-catechin, (−)-epicatechin, (−)-epicatechin gallate, procyanidin B1 and procyanidn B2 were obtained from Sigma-Aldrich (St. Louis, MO, USA). Diethyl ether, pyridine, dichloromethane, 1,4-dioxane, pentane and ethyl acetate were obtained from Merck (Darmstadt, Germany). Formic acid (LC-MS, Fluka), methanol (LC-MS, Chromasolv, Sigma-Aldrich) and ultra-pure water of Milli Q gradient (EMD Millipore, Billerica, MA, USA) were used for chromatography. For grape grinding under cryogenic conditions (−196 °C) a M20 mill from IKA (Staufen, Germany) was used.
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9

Automated Odorant Delivery System

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Odorants were applied automatically, using a computer controlled autosampler (PAL, CTC Switzerland). 2 ml of headspace was injected in two 1 ml portions controlled by TTL pulses at time points 6 s and 9 s with an injection speed of 1 ml/s into a continuous flow of purified air flowing at 60 ml/min. The 1 s stimulus was directed onto the antenna of the fly via a Teflon tube (inner diameter 1 mm, length 38 cm). The autosampler syringe was flushed with purified air for 1 min after each injection and washed with pentane (Merck, Darmstadt, Germany), heated and flushed automatically for several minutes after each application of 1-butanol.
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10

Synthesis of Luminescent Nanoparticles

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Ferric hydroxide oxide (hydrated, 30–50 mesh), oleic acid (90%), oleylamine (90%), n-docosane (99%), ammonia (30%), tetraethylorthosilicate (TEOS, 99%), (3-chloropropyl)-triethoxysilane (95%), (3-iodopropyl)trimethoxysilane (95%), sodium iodide, potassium tertbutoxide (tBuOK), tert-butanol (tBuOH), europium(III) chloride hexahydrate (99.9%, trace metals basis), terbium(III) chloride hexahydrate (99.9%, trace metals basis), acetylacetone, pentane, diethyl ether, cyclohexane, acetone, and ethanol were purchased from Merck. Triton X-100 and 1-hexanol (99%) were purchased from Alfa Aesar (Haverhill, MA, USA).
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