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3 protocols using anti ifit1

1

Western Blot Analysis of IFIT Proteins

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Cells were disrupted using Radioimmunoprecipitation assay (RIPA) lysis and extraction buffer (Sigma-Aldrich) supplemented with protease inhibitor cocktail (Sigma-Aldrich). Immunoblots were performed using a rabbit polyclonal anti-IFIT1 (Thermo Fisher), rabbit anti-GAPDH (Cell Signaling Technology), rabbit polyclonal anti-IFIT3 (Fensterl et al., 2008 (link)), or mouse monoclonal anti-FLAG M2 (Sigma-Aldrich), followed by IRDye 680RD goat anti-rabbit or IRDye 800CW goat anti-mouse (LiCor). Blots were imaged using a LiCor Odyssey infrared imaging system.
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2

Immunoblotting Analysis of Innate Immune Signaling

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5′ppp-treated cells were lysed in RIPA buffer (50 mN Tris-Hcl PH 8, 1% sodium deoxycholate, 1% NP-40, 5 mM EDTA, 150 mM NaCl, 0.1% sodium dodecyl sulfate) and cleared by centrifugation at 17,000×g for 15 min at 4°C. Cleared lysates were subjected to SDS-PAGE analysis on 4–20% acrylamide Mini-Protean TGX precast gels (Biorad, Hercules, USA). Proteins were electrophoretically transferred to Immobilon-PSQ PVDF membranes (Millipore, Billerica, USA) and then subjected to immunoblotting using indicated antibodies. Anti-pIRF3 Ser 396 and anti-RIG-I antibodies were purchased from EMD Millipore, anti-IRF3 from IBL, Japan, anti-IFIT1 from Thermo Fisher Scientific, anti pSTAT1 Tyr701 and anti-STAT1 from Cell Signaling, and anti-β-actin from Odyssey.
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3

Protein Extraction and Western Blot Analysis

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Total liver protein extracts were prepared using a lysis buffer containing 50 mM Tris–HCl (pH = 7.5), 137 mM NaCl, 1 mM EDTA, 1% Triton X-100, 10% glycerol, 10 mM NaF, 10 mM Na4P2O7, 1 mM Na3VO4, and protease inhibitor cocktail. The lysates were separated by SDS-PAGE and transferred to a PVDF membrane, followed by immunoblotting with primary antibodies and secondary antibodies. The following antibodies were used: anti-TBK1 (Cell Signaling Technology, 3013); anti-phospho-TBK1S172 (Cell Signaling Technology, 5483); anti-IFIT1 (Thermo Fisher, PA3-846); anti-IFIT3 (ProteinTech, 15201-1-AP); anti-ZBP1; anti-STAT1 (Cell Signaling Technology, 9172); anti-phospho-STAT1Y701 (Cell Signaling Technology, 9171); anti-HSP90 (Santa Cruz BioTech, sc-7947). TSK antibody was generated in rabbits with a synthetic peptide corresponding to mouse TSK (amino acids 317-335; CRRLVREGAYHRQPGSSPK) and affinity purified.
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