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Gelred nucleic acid gel staining

Manufactured by Biotium
Sourced in United States

GelRed™ Nucleic Acid Gel-staining is a fluorescent dye used for staining DNA and RNA in agarose gels. It binds to nucleic acids and emits a bright fluorescent signal when excited by ultraviolet or blue light.

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2 protocols using gelred nucleic acid gel staining

1

Evaluating HpSoj DNA-Binding Affinity

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The DNA-binding ability of HpSoj was detected using EMSA. Reactions were performed in a volume of 24 μl in reaction buffer (20 mM Tris pH 8.0, 175 mM NaCl, 5 mM MgCl2 and 10% glycerol). Each reaction contained HpSoj (0–1000 pmol) and parS24 (24 bp) or parS55 (55 bp) (25 pmole) in various molar ratios of protein to DNA (0, 2, 10, 20 or 40), with or without 1 mM ADP or ATP. Reactions were incubated at 20°C for 20 min. Samples were analyzed on 4–15% gradient polyacrylamide gels (GoPAGE™ TGN Precast Gel, SMBiO) in 1× TGN buffer at 4°C for 150 min and visualized by GelRed™ Nucleic Acid Gel-staining (Biotium).
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2

Equine Cell Screening for EcPV2

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To confirm their equine origin and to screen for EcPV2 infection, proliferating early-passage cells were subjected to DNA extraction using QIAamp DNA Minikit (Qiagen, Hombrechtikon, Switzerland) according to the manufacturer’s instructions. PCR reactions were performed from 1 μL DNA aliquots using (i) horse specific GAPDH primers (ecGAPDHi forward primer: 5′-ATC CGG AGT CTT CCA CTC CA-3′, ecGAPDHi reverse primer: 5′-GTC GGA GGG TTA ACC ACA GG-3′) and (ii) EcPV2-specific primers for amplification of a 395 bp region within the E6 gene (18). Reaction mixtures of 25 μL were prepared according to the manufacturer’s instructions (REDTaq ReadyMIX, PCR Reaction mix; Sigma-Aldrich, Merck & Cie, Schaffhausen, Switzerland) and then subjected to a denaturation step of 94 °C for 3 min, followed by 40 amplification cycles of 94 °C for 30 s, 55 °C for 30 s and 72 °C for 30 s per cycle. Amplicons were separated by 1% TAE-gel electrophoresis and visualized by GelRed® Nucleic Acid Gel Staining (Biotium, Inc. Fremont, CA, USA).
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