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3 protocols using pe anti bcl 6

1

Comprehensive Immune Cell Profiling

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Freshly isolated cells were stained on the same day as the isolation. For staining, cells were incubated with LIVE/DEAD™ Fixable Green Dead Cell Stain Kit (Fisher Scientific) and surface protein antibodies at 4 °C for 30 min. Stained cells were washed with FACS buffer and resuspended in Foxp3 Fixation/Permeabilization buffer (eBiosciences) according to manufacturer’s instructions. Fixed cells were stained for Bcl6 with PE anti-Bcl-6 (BD Biosciences) at room temperature for 30 mins. Cells were washed twice with 2 mL 1x permeabilization buffer before being resuspended in FACS buffer. Flow cytometric data were collected using a BD LSR Fortessa analyzer (BD Biosciences) with FACS Diva version 8.01 software. Data was subsequently analysed with FlowJo (version 10, Tree Star). Single leukocytes were identified based on forward and side scatter parameters, and expression of CD45. Dead and lineage positive cells were excluded using LIVE/DEAD™ Fixable Green Dead Cell Stain Kit (Fisher Scientific) and lineage markers (CD1a, CD14, CD34, CD94, BDCA2, FcεRIα, CD123, TCRγδ, CD19). T helped cells were gated at CD45+CD3+CD4+ before further gating as CXCR5+PD1+ TfH cells. ILCs were gated as Lin-CD3-CD127+ before further gating into CD117-CRTH2- ILC1s and CD117+CRTH2- ILC3s, ILC3s were then gated as NKp44+NRP1+ or NKp44-NRP1-.
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2

Multi-Parameter Flow Cytometry and Immunohistochemistry

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Anti‐human mAbs including APC‐anti‐CD3 (UCHT1), FITC‐anti‐CD3 (UCHT1), APC‐Cy7‐anti‐CD4 (RPA‐T4), PE‐anti‐CD8 (SK1), APC‐anti‐CD8 (SK1), PE‐Cy7‐anti‐CD38 (HIT2), PE‐anti‐PD‐1 (EH12.1), PerCP‐Cy5.5‐anti‐CXCR5 (RF8B2), PE‐anti‐CD27 (M‐T271), FITC‐anti‐CD27 (M‐T271), FITC‐anti‐CD45RA (HI100), APC‐anti‐CCR6 (11A9), PE‐Cy7‐anti‐CXCR3 (1C6), and APC‐Cy7‐anti‐CD19 (SJ25C1) (BD Biosciences) and anti‐mouse mAbs including PE‐Cy7‐anti‐CD3 (145‐2C11), PerCP‐Cy5.5‐anti‐CD4 (RM4‐5), PE‐anti‐B220 (RA3‐682), PE‐anti‐Bcl‐6 (K112‐91), PE‐anti‐T‐bet (4B10), PE‐anti‐GATA3 (L50‐823), PE‐anti‐RORγt (Q31‐378) (BD Bioscience), APC‐anti‐PD‐1 (29.F1A12), FITC‐anti‐CXCR5 (L138D7), and Pacific Blue‐anti‐CD45.2 (104) (Biolegend) were used for flow cytometry. For immunohistochemistry, we used anti‐human Abs including Alexa Fluor 647‐anti‐CD4 (MT310), mouse anti‐Bcl6 (P1F6; Nichirei, Tokyo, Japan), and rabbit anti‐Bob1 pAb (C‐20; Santa Cruz Biotechnology) for staining of human tonsils and we used hamster anti‐mouse CD3 (500A2; Life Technologies) and biotin‐PNA visualized by streptavidin‐PE (Vector Laboratory) for staining of mouse spleens.
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3

Multicolor Flow Cytometry of T-cell Subsets

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Multicolor flow cytometry was performed on fresh PBMCs and frozen LNMCs. T-cell subpopulations were determined using the different combinations of the following fluorochrome-conjugated antibodies: Pacific Blue, PE-Cy7 or Alexa-Fluor 700anti-CD3, PerCP or Alexa-Fluor 700 anti-CD4, PE anti-CD27, PE-Cy7 anti-CCR7, PE-CF594 anti-CD45RO, Alexa-Fluor 488 anti-CXCR5, Alexa-Fluor 647 anti-CCR4, PE anti-CXCR3, PE-Cy7 anti-CCR6 (Becton Dickinson Biosciences, Pont de Claix (Le), France). Vioblue anti-CD3, APC-Vio770 anti-CD4, APC-Vio770 anti-CD45RO, APC anti-CD28 (Milteniy Biotech, Paris, France). Brillant Violet 421 anti-CD279 (Biolegend, London, UK).
Intracellular staining was carried out using the FoxP3 permeabilization solution kit according to the manufacturer's instructions (eBioscience, Paris, France) together with PE Ki67, PE anti-Bcl-6 (BD Pharmingen) or PE anti-FoxP3 (Biolegend), and Alexa-Fluor 488 anti-SAMHD1 (a gift from O. Schwartz) or rabbit anti-SAMHD1 (Euromedex, Souffelweyersheim, France) followed by Alexa-Fluor 647 antirabbit antibody (Invitrogen, Life Technologies, Saint Auben, France).
Dead cells were excluded using the Live/Death Vivid detection kit labeled with an aqua dye (Invitrogen). Fluorescence intensities were measured with an LSR II flow cytometer (Becton Dickinson) and analyzed using FlowJo version 7.6.5 (Tree Star Inc., Ashland, Oregon, USA).
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