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38 protocols using anti hla dr

1

Immunophenotyping of Cryopreserved PBMCs

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Cryopreserved PBMC were isolated and used for immunophenotypic staining as previously described (108 (link)). Cells were stained with Zombie NIR fixable viability stain (BioLegend, San Diego, USA) and the following anti-human monoclonal fluorochrome-conjugated antibodies: anti-CD45RA, anti-CD4, anti-TCR-γ/δ (BD Biosciences, Heidelberg, Germany), anti-TCR-Vδ2 (Beckman Coulter Life Sciences, Indianapolis, USA), anti–HLA-DR, anti-CD27, anti-CD279 (PD-1), anti-TIGIT, anti-CD8, anti-CD28, anti-CD39, anti-CD38, anti-CD19, anti-CD3, anti-CD73 and anti-CD14 (all BioLegend) (Supplementary Table 2). Cells were incubated for 30 minutes at room temperature with the respective antibodies. After washing, cells were fixated with 4% paraformaldehyde. All samples were run on a Becton Dickinson LSR Fortessa flow cytometer with FACS Diva version 8 (BD Biosciences).
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2

Cell Surface Immunophenotyping Protocol

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For cell-surface labeling, 1 × 106 cells were blocked with Fc-block reagent (BD Biosciences). Then the following antibodies were added and incubated for 30 min, including anti-CD3 (BioLegend, HIT3a), anti-CD14 (BioLegend, 63D3), anti-HLA-DR (BioLegend, L243), and anti-CD45 (BioLegend, 2D1). After incubation, the samples were washed and reconstituted in phosphate-buffered saline for flow cytometric analysis on a FACSCanto II flow cytometer.
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3

Phenotyping of Macrophage Cultures

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Antibody staining for flow cytometry was done in FACS buffer (PBS, 0.1% BSA) at room temperature in the dark for 30 min, followed by washing in FACS buffer and fixation with 2% paraformaldehyde in FACS buffer. Cells were stained with the following antibodies: anti-CD14 (Biolegend, 301806), anti-CD16 (Biolegend, 302018), anti-CD38 (Biolegend, 301806), anti-CD86 (BD biosciences), anti-HLA-DR (Biolegend, 307642), anti-CD163 (Biolegend, 333608) and anti-CD206 (Biolegend, 321109). In addition, cells were stained with live/dead dye (Invitrogen, P30253) to identify live cells.
Flow cytometry data was acquired on a Celesta flow cytometer (BD biosciences) and flow cytometry data was analyzed using Flowing software (Turku Bioscience). Analysis showed that 63.9% of macrophage culture were CD14+ macrophages (S1F Fig). CD14+ macrophages were positive for macrophage markers CD38 (99%), CD86 (98.5%), HLA-DR (74.9%), CD206 (91.6%), CD163 (61.6%) and CD16 (88%) (S1F Fig).
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4

Characterization of hucMSC Surface Markers and Differentiation

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To evaluate the surface markers of hucMSCs, hucMSCs at passage three were incubated with antibodies anti-CD34 (catalog number: 343503, BioLegend, San Diego, CA, USA), anti-CD73 (catalog number: 344015, BioLegend), anti-CD29 (catalog number: 303004, BioLegend), anti-CD14 (catalog number: 397706, BioLegend), anti-CD105 (catalog number: 323203, BioLegend), anti-CD19 (catalog number: 302205, BioLegend), anti-CD45 (catalog number: 304005, BioLegend), anti-HLA-DR (catalog number: 327005, BioLegend), and anti-CD90 (catalog number: 328108, BioLegend). Fluorescence was detected using a flow cytometer (NovoCyte 1300; ACEA, San Diego, CA, USA) to identify hucMSCs.
To evaluate cell differentiation, hucMSCs at passage three were cultured in adipogenic (catalog number: A1007001, Gibco, Grand Island, USA), chondrogenic (catalog number: A1007101, Gibco), or osteogenic medium (catalog number: A1007201, Gibco) for 3 weeks. Subsequently, the cells were fixed with 4% paraformaldehyde, and stained with oil red O (catalog number: HY-D1168, MedChemExpress, New Jersey, USA), alcian blue (catalog number: HY-D0001, MedChemExpres), or alizarin red (catalog number: HY-120601, MedChemExpres), respectively. The stained cells were observed under a light microscope (Olympus, Tokyo, Japan).
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5

Differentiation of Human Monocyte-Derived Macrophages

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CD14+ column-purified human elutriated monocytes were obtained from peripheral blood of healthy donors from the NIH blood bank under Institutional Review Board–approved protocols of both the NIAID and the Department of Transfusion Medicine and were cultured in 96-well plates (Corning) in the presence of Roswell Park Memorial Institute (RPMI) 1640 media (Life Technologies) containing 10% human AB serum (Corning) and media containing growth factor (M-CSF) 50 ng/ml (PeproTech) for 7 d. Fresh M-CSF was added every 48 h, as previously described (Mayer-Barber et al., 2011 (link)). For in vitro experiments, the macrophages differentiated by this procedure were washed with 1× DPBS and cultured in the Opti-MEM media (Gibco) at 37°C in 5% CO2 atmosphere. The resulting cells were shown to be ∼98% pure based on extracellular double staining with anti-CD14+ (BD Biosciences) and anti-HLA-DR (BioLegend) macrophage markers and analyzed by flow cytometry.
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6

Flow Cytometric Immune Profiling of Whole Blood

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All samples were processed within 12 h from collection. Whole blood was lysed prior to staining using the RBC Lysis solution (Qiagen, Germany) according to manufacturer's specification. Immune populations were identified by staining with fluorophore-conjugated anti-CD11b, anti-CD33, anti-CD3, anti-HLA-DR, anti-CD45, anti-CD68, anti-CD206, anti-CD163, (BioLegend), anti-CD14, anti-CD15 (eBioscience) antibodies on ice for 30 min. Fluorescence data was acquired using BD Accuri C6 (BD Biosciences), Cyan and/or CytoFLEX (Beckman Coulter) cytometers. Normalised population statistics –including the median fluorescence intensities (MFI) were determined using FlowJo (BD Biosciences, formerly developed by FlowJo LLC).
Where indicated cell death was assessed by propidium iodide staining of cells after 72 h incubation with Gemtuzumab ozogamicin (Gift from Pfizer).
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7

Dendritic Cell Surface Marker Analysis

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mDCs were resuspended in ice cold PBS supplemented with 2 mM EDTA, 0.1% BSA, and 0.01% sodium azide, blocked with 10% mouse serum (Sigma) and stained with anti‐CD83 (BD), anti‐CD86 (BD), and anti‐HLA‐DR (Biolegend). Surface expression was evaluated relative to unstimulated stained controls on a BD CANTO II and analyzed using FlowJo software (Treestar).
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8

Immunophenotyping of Mesenchymal and Immune Cells

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Flow cytometric analyses were performed with Gallios (Beckman Coulter) flow cytometers, and the data were analyzed with the FlowJo (Treestar) software packages.
MSCs were incubated with anti-CD90, anti-CD105, anti-CD73, anti-CD44, anti-CD11B, anti-CD34, anti-CD19, anti-CD45 and anti-HLA-DR antibodies to examine MSC surface markers, which were purchased from BioLegend. Anti-CD3, anti-CD4, anti-CD8, anti-TNF-α and anti-IFN-γ antibodies were used to examine stain T cells. Propidiumiodide (PI; BD) and Annexin V (BD) were used to stain apoptosis cells. Anti-CD86, anti-F4/80 and anti-CD45 antibodies were used to stain macrophages.
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9

Characterizing Myeloid Cell Differentiation

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Kasumi-1 cells were plated in 6-well-plates (5x105 cells/well) and treated for 6 days with the indicated concentrations of DAC and/or BZ. DAC and/or BZ were administrated fresh every 24 h, along with fresh medium. Untreated cells were plated at a density of 3x105 cells/well. After washing and blocking with FcBlocker (cat. no. 422302; BioLegend, Inc.) for 10 min at room temperature, cells were stained in three 4-color tubes with FITC-conjugated anti-CD11b (cat. no. 301329; BioLegend, Inc.), anti-CD14 (cat. no. CYT-14F6; Cytognos), anti-CD15 (cat. no. CYT-15F4; Cytognos), phycoerythrin (PE)-Cyanine 5-conjugated anti-CD16 (cat. no. 302010; BioLegend, Inc.) and anti-HLA-DR (cat. no. 307608; BioLegend, Inc.), allophycocyanin-conjugated anti-CD45 (cat. no. CYT-45AP5; Cytognos) and PE-conjugated anti-CD13 (cat. no. 301704; BioLegend, Inc.), anti-CD117 (cat. no. 313204; BioLegend, Inc.) and anti-CD193 (cat. no. 310706; BioLegend, Inc.). The analysis was performed on a CyFlow ML (Partec).
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10

Mapping HLA-Restricted T Cell Epitopes

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To determine HLA I-restricted epitopes from CD8+ T cells, a B cell panel containing autologous and allogeneic BCL was used. BCL were pulsed with the specific peptide for 1 h at 10 μg/mL, washed, and then cocultured with CD8+ T cell clones in an IFN-γ ELISpot assay. To determine HLA II-restricted epitopes from CD4+ T cell clones or lines, autologous BCL were blocked with 10 μg/mL of either anti-HLA-A/B/C (BD Biosciences), anti-HLA-DP (Abcam), anti-HLA-DQ (BioLegend), anti-HLA-DR (BioLegend), or anti-HLA-DP/DQ/DR (BioLegend) antibodies for 30 min and then pulsed with the specific peptide for 1 h at 10 μg/mL. Pulsed BCL (1 × 103 cells/well) were then washed 3 times with R10, mixed with CD4+ T cells (1 × 104 to 2 × 104 cells/well), and tested in IFN-γ ELISpot assay in the presence of 10 μg/mL of anti-HLA antibodies.
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