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29 protocols using erastin

1

Fucoidan-Mediated Cellular Stress and Inflammation

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Depending on the experiment, cells were treated with 1, 10, 50, or 100 µg/mL fucoidan. Regarding oxidative stress assays OMM-1 were treated with fucoidan for 30 min before stress insult was applied by adding 500 µM H2O2 (Sigma-Aldrich, St. Louis, MO, USA) or 25 µM erastin (Cayman Chemical, Ann Arbor, MI, USA), and ARPE-19 were treated with fucoidan for 30 min, followed by 250 µM H2O2 and 20 µM erastin, respectively. Regarding inflammation, cells were treated with 1 µg/mL LPS (Merck, Darmstadt, Germany), 10 µg/mL PIC (Tocris Bioscience, Bristol, UK), 50 ng/mL TNF (R&D System, Minneapolis, MN, USA), or 10 ng/mL Pam2CSK4 (Pam, Tocris Biosciences, Bristol, UK). Depending on the assay, different stimulation times were used as indicated in the result section.
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2

Lipid Imaging Probes for Cellular Analysis

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Reagents used in this study include: Arachidonic acid-d6 (Retrotope, Inc.), Eicosapentaenoic acid-d8 (Retrotope, Inc.), Docosahexaenoic acid-d10 (Retrotope, Inc.), Erastin (Cayman Chemical), Imidazole Keto Erastin (IKE) (Stockwell laboratory), RSL3 (Stockwell laboratory), FIN56 (Gift of Rachid Skouta), FINO2 (Woerpel laboratory), Brequinar (BQR) (Cayman Chemical) PF-06424439 (Cayman Chemical), A922500 (Cayman Chemical), Arachidonic acid-d11 (Cayman Chemical), Docosahexaenoic acid-d5 (Cayman Chemical), Oleic acid-d17 (Cayman Chemical), Palmitoleic acid-d13 (Cayman Chemical), Myristic acid-d27 (Sigma-Aldrich), Cholesterol-d6 (Sigma-Aldrich), Thimerosal Ready Made Solution (Sigma-Aldrich), Miltefisone (Cayman Chemical), N-ethylmaleimide (Sigma-Aldrich), LysoTracker Green DND-26 (Invitrogen), LysoTracker Red DND-99 (Invitrogen), Nile Red (Invitrogen), ERTracker Red (Invitrogen), ERTracker Green (Invitrogen), ERTracker Blue-White DPX (Invitrogen), BODIPY TR Ceramide complexed to BSA (Invitrogen), MitoTracker Red CMXRos (Invitrogen), Hoechst 33342 (Invitrogen), BODIPY 581/591 C11(Invitrogen), CellMask Deep Red (Invitrogen), and FM 4-64 (Invitrogen).
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3

Generation and Characterization of ATF3 Knockout Cells

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HT1080 cells expressing ATF3 and empty vector were generated previously [26 (link)]. Retinal pigment epithelial (RPE) cells immortalized with hTERT were obtained from Dr. Todd Waldman [27 (link)]. To generate ATF3-knockout cells, a target sequence (5′-AAAATGATGCTTCAACACCC-3′) spanning the ATF3 start codon was inserted into pSpCas9(BB)-2A-puro, and used to transfect RPE and U2OS cells as described [28 (link)]. ATF3-knockout HCT116 cells were generated using rAAV-mediated homologous recombination as described previously [14 ]. These cells were cultured in media supplemented with 10% fetal bovine serum. We used DMEM for HT1080, RPE, DU145, and U2OS cells, RPMI 1640 for PC3 cells, and McCoy’s 5A for HCT116 cells. Erastin, RSL3, ferrostatin-1, BSO, Z-VAD-FMK, and FIN56 were purchased from Cayman Chemical. N-acetylcysteine (NAC) was purchased from Thermo Fisher Scientific. Other reagents were obtained from Sigma-Aldrich.
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4

Dual-Color Bioluminescence Imaging for Growth and Cytotoxicity

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For growth and cytotoxicity curves, we performed dual-dolor bioluminescence imaging of CBRed and CBG using an IVIS Lumina Series III (Perkin Elmer, Waltham, MA, USA) as previously described (34 (link)). We exported photon flux data from regions of interest defined in Living Image 4.3.1 (Perkin Elmer) and quantified changes in growth or viability with custom MATLAB code.
For cytotoxicity curves, we treated cells with compounds diluted in LG/LF media for three days. We used ferric ammonium citrate (FAC) (#F5879, Sigma Aldrich), fulvestrant (#S1191, Selleckchem), tamoxifen, deferoxamine (DFO), deferasirox (DFX), RSL-3, salinomycin, and erastin (#13258, #14595, #16753, #17754, #19288, and #13579, Cayman Chemical). We manufactured salinomycin analogs AM5 and AM23 as previously described (35 ).
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5

Antibody Detection in Cell Lines

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Anti-KEAP1 (clone D6B12, #8047, 1:1000), anti-βactin (clone 13E5, #4970, 1:4000), anti-LKB1 (clone D60C5, #3047, 1:1000), anti-Vinculin (#4650, 1:4000), anti-TP53BP1(#4937,1:1000), anti-βcatenin (clone D10A8, #25362, 1:2000), anti-phospho-p44/42 MAPK (#9101, 1:3000), anti-phospho-MEK1/2 (clone 41G9, #9154, 1:1000 dilution), anti-xCT/SLC7A11(clone D2M7A, #12691, 1:1000) were from Cell Signaling Technology, MA. Anti-NRAS antibody (#ab77392) was from Abcam, MA. Erastin (#17754) was from Cayman Chemical. Sotorasib (#HY-114277) used ex vivo was from MedChemExpress.
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6

Ferroptosis imaging protocol

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Cells were seeded in glass bottom 35 mm dishes (Ibidi) with density of 0.5 million cells per well for 24 hours. Cells were loaded with fluorescent probes to measure cytosolic labile ferrous iron (BioTracker 575 Red Fe2+ Dye, Millipore), cytosolic labile iron (Calcein-AM, Thermo), lipid peroxidation (BODIPY™ 581/591 C11, Thermo), cytosolic ROS (H2DCFDA, Thermo) and mitochondrial ROS (mitoSOX, Thermo). Dyes were incubated with cells for 15~30 minutes and washed with warmed PBS for three times. Cells were treated by Erastin or RSL3 (Cayman) overnight and cell death were analyzed by propidium iodide (PI) (Sigma) staining for 15 minutes. Live cell images were collected by Plan-Apo 20x/0.8 objective and Axiocam 503 Mono camera with AxioVert 200 system.
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7

Ferroptosis Sensitivity Assay Protocol

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Cells were seeded at 2000 cells per well on a 96-well plate and were grown overnight at 37 °C. The following day, cells were treated with the following drugs at indicated concentrations for 72 h for IC50 assays: erastin (Cayman Chemicals), RSL3 (Apex Bio), TBH(Sigma), nutlin-3a (Calbiochem), cisplatin (Acros Organics), Etoposide (Sigma), Camptothecin (Cayman Chemicals), and doxorubicin (Cell Signaling). Because fetal bovine serum and culture media can contain significant levels of glutathione, pyruvate, and other agents that can influence sensitivity to ferroptosis (10 (link)), all ferroptosis sensitivity assays were performed in low serum/low glucose (2% fetal bovine serum, DMEM low glucose (Corning Cellgro, 1 g/l glucose)). For rescue assays, cells were pretreated with ferrostatin (Cayman Chemicals) or liproxstatin (Sigma) for 30 min prior to treatment with RSL3 for 24 h. For lipid droplet assays, cells were pretreated overnight with oleic acid (Sigma, O3008), the DGAT2 inhibitor PF-06424439 (Sigma, PZ0233), or vehicle (fatty-acid–free BSA), and viability was assayed using Trypan Blue (Corning, 25-900-CI) after 72 h. At assay endpoint, cells were treated with Alamar blue (Life Technologies Dal1025) for 3 h at 37 °C and absorbance was read using a SynergyHT plate reader (BioTek). GraphPad Prism software was used to perform the data analysis.
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8

Pharmacological Modulation of Ferroptosis

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BRAF inhibitors vemurafenib and dabrafenib as well as and MEK inhibitors selumetinib and trametinib were obtained from Selleckchem or LC Laboratories. Pro-ferroptotic drugs RSL3 and Erastin were obtained from Cayman Chemical and Selleckchem, respectively. Ferroptocide was described previously(56 (link)). DNA-PK inhibitor NU7026 was purchased from Selleckchem. Inhibitors were all dissolved in DMSO.
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9

Ferroptosis-associated Compounds Evaluation

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Erastin, RSL3, ML162, ML210, ferrostatin-1, liproxstatin-1, JAK inhibitor I and ruxolitinib were purchased from Cayman Chemical. Doxorubicin (Adriamycin) HCl and gemcitabine were purchased from Selleckchem. Deferoxamine mesylate salt, L-Glutathione reduced, sulfasalazine, L-Buthionine-sulfoximine, 2-Mercaptoethanol, and SIINFEKL peptide (OVA 257–264) were purchased from Sigma-Aldrich. Recombinant human IFNγ (285-IF) and mouse IFNγ (485-MI) were purchased from R&D. BODIPY 581/591 C11, anti-IFNγ (XMG1.2) and anti-TNFα (MP6-XT22) blocking antibodies were purchased from Thermo Fisher Scientific. Liperfluo was purchased from Dojindo Molecular Technologies. Cyst(e)inase was obtained from the laboratory of Everett Stone and George Georgiou (University of Texas at Austin, TX, USA).
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10

Ferroptosis Induction and Inhibition

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Erastin and temozolomide were purchased from Cayman Chemical Company (Michigan, USA) and were dissolved in DMSO under sterile conditions to a concentration of 1 and 50 mM, respectively. 1S,3R-RSL3 (RSL3) and Ferrostatin-1 were purchased from Sigma-Aldrich (Taufkirchen, Germany) and were dissolved in DMSO at a concentration of 1 mM.
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