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19 protocols using pkh26 fluorescent dye

1

Fluorescent Labeling of Human MenSCs

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Before transplantation, human MenSCs were labeled with PKH26 fluorescent dye (Sigma Aldrich, USA) according to the manufacturer’s protocol. Briefly, after detachment, MenSCs (2 × 106), were washed in a serum-free medium and suspended in 1 ml of PBS. Four microliters of PKH26 solution were diluted in PBS (1:1) and the cells were immediately incubated with the prepared solution for 25 min at 25 °C. Then, the labeling process was completed by adding 2 ml of fetal bovine serum (FBS). Finally, the cells were washed with an enriched culture medium (Denazist, Iran) [6 (link)].
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2

In Vitro Cytotoxicity Assay of EV-DNTs and CAR4-DNTs

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Target cells were labeled with 2 µM PKH26 fluorescent dye (Sigma) according to the manufacturer’s instruction and cocultured with EV-DNTs and CAR4-DNTs in a 96-well plate at various effector-to-target ratios for 2 hours or 24 hours at 37°C. Subsequently, cells were stained with annexin V, and apoptosis of the target cells was analyzed by flow cytometry. Per cent specific killing was calculated using the formula: %AnnexinV+withDNT%AnnexinV+withoutDNT100%AnnexinV+withoutDNT×100 as previously described. For transwell assays, an HTS Transwell 96-well permeable support (Sigma) with 0.4 µm pore size was used. For blocking assays, anti-CD18 (TS1/18, BioLegend), NKG2D (1D11, BioLegend), DNAM-1 (DX11, BD Bioscience), TNF-α (MAb11, BioLegend), IFN-γ (MD-1, BioLegend), TRAIL (RIK-2, BioLegend), and FasL (NOK-1, BioLegend) antibodies or immunoglobulin 1 (IgG1) isotype control (QA16A12, BioLegend) was added at 10 µg/mL. For blocking assays with concanamycin A (CMA), EV-DNTs or CAR4-DNTs were treated with CMA (100 nM; Sigma) or dimethyl sulfoxide (DMSO) for 30 min prior to use for in vitro cytotoxicity assay.
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3

Isolation and Characterization of Microvesicles

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Microvesicles were isolated from (i) conditioned medium obtained from 250 × 106 C26 or LLC cells cultured for 48 h, (ii) plasma derived from healthy mice and rats, and (iii) plasma derived from C26 host or rats bearing the AH‐130 hepatoma. Conditioned medium or plasma was centrifuged (300g, 10 min) to eliminate cell debris. The supernatant was recovered, and successive centrifugations at increasing speed were performed: one at 2000g for 20 min to eliminate dead cells, then one at 10 000g for 30 min to remove cell debris, and finally one at 100 000g for 70 min to pellet MVs. The resulting pellet was washed in phosphate‐buffered saline (PBS) and ultracentrifuged again at the same speed (Supporting Information, FigureS1A). The pellet was resuspended in 1 mL PBS. Nanosight characterization of isolated particles revealed a population ranging from 90 to 600 nm, with a peak of abundancy at 200 nm (FigureS1B), thus confirming the enrichment in MVs.12 MV internalization into C2C12 myotubes was assessed by fluorescence microscopy using the PKH26 fluorescent dye (Sigma‐Aldrich).
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4

Exosome Fluorescent Labeling Protocol

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Exosomes were labeled with pyridoxal kinase 26 (PKH26) fluorescent dye (Sigma-Aldrich, St. Louis, MO, USA): 4 μL of PKH26 fluorescent dye was supplemented to 1 mL Dilument C (Beyotime, Shanghai, China) solution to prepare 4 µM PKH26 dye, which was then added with 200 μg of exosomes. The above two solutions were subsequently mixed gently for five min and then centrifuged for 2 h at 100,000×g and 4 °C for 2 h, resuspended, and centrifuged again as before prior to the collection of the fluorescent-labeled exosomes.
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5

Mesenchymal Stem Cell Isolation and Labeling

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Mesenchymal stem cells (MSC, Lonza, Inc., Switzerland) were cultured in MSC growth media supplemented with MSC growth supplement, L-glutamine, and Gentamicin-Amphotericin-B (Lonza, Inc., Switzerland) as previously reported [28 (link)]. Cultured MSC (60–70% confluence) were harvested between passages 5–8 using a standard procedure with 0.25% trypsin-EDTA (Gibco-Thermo Fischer, USA) [29 (link)]. Prior to injection, MSC were labeled using PKH26 fluorescent dye (Sigma-Aldrich, UK) according to the manufacturer’s instructions and as reported previously [28 (link)]. The efficacy of MSC labeling with PKH26 fluorescent dye was confirmed prior to cell delivery by flow cytometry and confocal microscopy. Briefly, unstained MSC controls and PKH26 labeled MSC were fixed in 4% paraformaldehyde and analyzed using a Fortessa flow cytometer (Becton Dickinson, USA). For confocal microscopy, cells were spun onto positively charged lysine-coated slides and counterstained with DAPI (Vector Laboratories, USA). Next, slides were examined using Zeiss Meta confocal microscope and analyzed with ZEN software (Zeiss, Germany). The viability and number of hMSC before and after PKH26 labeling were tested using 0.4% Trypan Blue.
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6

Exosome Isolation and Characterization from IL-6-Treated hUC-MSCs

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hUC-MSCs were cultured with 1 ng/mL IL-6 (Sigma-Aldrich) in the medium for 48 h, and the supernatant was collected for exosome purification using an ExoQuick ULTRA EV isolation kit (SBI, Palo Alto, CA, USA). The characterization of exosomes was confirmed by electron microscopy and particle size by NanoSight analysis (Shanghai Oe Biotech Co., Ltd.) as described [19 (link)]. The expression of the exosome-specific marker TSG101 (SBI) and the EV-related protein markers CD63 and CD81 (SBI) were analyzed by western blotting. miRNAs were extracted from exosomes using TRIzol reagent (Invitrogen, USA) for qPCR analysis or sequencing at Shanghai Oe Biotech. To identify the transport of exosomes, exosomes were labeled with PKH26 fluorescent dye (Sigma-Aldrich) [19 (link)].
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7

Tumor-Dendritic Cell Fusion Protocol

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Tumor cells (HepG2, A549, MGC-803 and primary HCC cells) at the logarithmic growth stage were collected, inactivated by 30 GyX irradiation, and mixed and cultured with PKH26 fluorescent dye (Sigma-Aldrich, USA). DCs cultured with CFSE fluorescent dye (Sigma-Aldrich, USA) were blended with tumor cells at 2:1 ratio, and the mixture was added into a 50 ml centrifuge tube. During this process, PEG (Sigma, USA) was slowly and gently added along the wall of the tube and was water-bathed for 5 min at 37 °C. The diluted collagen I (Sigma, USA) was then added and soaked in a 37 °C water bath for 30 min.
The cells, upon PBS washing, were suspended again. The fusion of tumor cells and DCs was viewed by fluorescence microscopy (Nikon ECLIPSE 80i, Nikon, Japan). To assess the DC maturation, the fusion cells were collected after 7 days of culture, and MHC II(Abcam, UK, Cat No. ab55152), CD80(Abcam, UK, Cat No. ab134120), and CD86(Abcam, UK, Cat No. ab239075) expression levels were tested by flow cytometry (Backman CytoFlex S). FlowJo v10.0 was utilized for data analysis. The fluorescence intensity of fusion cells was captured under a fluorescence microscope.
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8

Exosome Uptake Visualization in HUVEC

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To assess exosome uptake by HUVEC, ECFC-Exos were labelled with PKH26 fluorescent dye (Sigma, USA), following kit protocols. Cells were exposed to PKH26 labeled exosomes for 8 ​h. The nucleus was stained with 4′,6-Diamidino-2-phenylindone (DAPI; Invitrogen, USA). Image capture was done via confocal laser microscope (Leica, Germany).
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9

Internalization of hUC-MSC-sEVs in Macrophages

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To identify the internalization of hUC-MSC-sEVs into macrophages, hUC-MSC-sEVs were stained with PKH26 fluorescent dye (Sigma-Aldrich, USA) according to the manufacturer’s instructions and centrifuged again to remove contaminating dye. Then, the PKH26-labeled hUC-MSC-sEVs (10 μg/ml) were co-cultured with PMA-treated macrophages. After 6h, the macrophages were washed with PBS and fixed in 4% paraformaldehyde for 15min. Thereafter, the nucleus was stained with DAPI (Solarbio, China). Finally, the cells were observed and photographed with the laser scanning confocal microscope (LSM800, Zeiss, Germany).
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10

Exosome Internalization by Oligodendrocytes

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Exosomes from POL cells were labeled with PKH26 fluorescent dye (Sigma) according to the manufacturer’s instructions. For POL cells transfected with miR-N.C. mimics or miR-199a-1-5p mimics, the mimics were labeled with Cy5 fluorescent dye (Sigma) according to the manufacturer’s instructions. Dye-labeled exosomes was added to OL cells and incubated at 37 °C for 18 h. The nuclei were stained with DAPI for 15 min and washed twice with PBS before confocal microscopy (TCS SP2, LEICA) analysis. A time course (0, 6, 12, 18 h) of exosomes uptake was conducted.
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