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103 protocols using leica cm3050

1

Histological Analysis of Carotid Arteries

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Histological analysis and immunohistochemistry staining were performed as previously described [38 (link)]. OCT-embedded common carotid arteries were cut systematically in serial 5-μm cross sections using a cryotome (Leica CM3050S, Leica Microsystems, Germany). Analysis was carried out in the injured left common carotid artery, whereas the contralateral served as a control. For morphometric analysis, sections were stained with hematoxylin and eosin (HE). For immunofluorescence analysis, sections were stained with a rabbit anti-rat CD31 antibody (1:250, Abcam, USA) and visualized using an Alexa Fluor 647 mouse-anti-rabbit IgG secondary antibody (1:500, eBioscience). For immunohistochemistry analysis, sections were stained with a rabbit anti-rat CD31 antibody (1:150, Abcam, USA) and visualized using a mouse-anti-rabbit secondary antibody (1:500, Sigma). Negative controls using IgG controls matching in species and concentration were run in parallel. Pictures were taken with a microscope (Leica CM3050S, Leica Microsystems, Germany) and a digital camera (DFC 320, Leica Microsystems) at ×100 magnification. Morphometric analysis was performed per sample followed by computer-assisted morphometric analysis (ImageJ, NIH, USA). Subsequent morphometric analyses were performed in a double-blinded manner. Four animals per group and 3 samples per animal were analyzed.
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2

Fingermark Deposition and Brain Tissue Sectioning

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Ungroomed fingermarks were prepared and deposited onto aluminium sheets (which were pretreated to remove the stationary phase) as previously described [15 (link)]. Fresh frozen rat brain tissue sections were cut to 10 μm thickness using a Leica CM3050 cryostat (Leica Microsystems, Milton Keynes, UK) operating at –20°C. Sections were subsequently thaw-mounted onto poly-lysine coated glass slides and stored in an airtight tube at –80°C. All animal tissue studies were carried out in accordance with Animals (Scientific Procedures) Act 1986 and the GSK Policy on the Care, Welfare, and Treatment of Laboratory Animals.
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3

Tissue Preservation and Sectioning for Hippocampal Analysis

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Animals were deeply anaesthetized with isoflurane and transcardially perfused with 4% formaldehyde solution. Brains from these animals were isolated, kept in 30% sucrose solution for 24 hours for cryoprotection, snap frozen in dry ice-cooled isopentane, and stored in -80°C until further processing. Next, coronal slices of the hippocampal-regions were serially sectioned at 18-μm using a microtome at -20°C (Leica CM 3050; Leica Microsystems) and mounted onto silanized glass slides. Glass slides were kept at −80°C until further use.
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4

Capillary Visualization and Quantification

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Serial 10‐μm cross‐sections were obtained using a cryostat (Leica CM 3050; Leica Microsystems, Bannockburn, IL) and mounted on poly‐ l‐lysine‐coated glass slides. Capillaries were identified using a periodic acid‐Schiff stain (Sigma) following digestion of glycogen by amylase and hematoxylin counterstain, as described previously (Solomon et al. 2011). Images were acquired by using a Nikon microscope and analyzed using NIS‐Elements Microscope Imaging Software (Nikon, Melville, NY). The number of capillaries per square millimeter of surface area and the average number of capillary contacts per fiber were determined.
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5

Cryopreservation of Diaphragm Muscle

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Sections of hemidiaphragm from wild type (n = 6), mdx (n = 7) and mdx + NAC-treated mice (n = 4) were mounted on cubes of liver. Diaphragm samples were embedded in optimum cutting temperature embedding medium (OCT; VWR International, Dublin, Ireland) for cryoprotection and then frozen in isopentane (Sigma Aldrich, Wicklow, Ireland) cooled on dry ice. Samples were then stored at −80 °C for subsequent structural analysis. Serial transverse muscle sections (10 µm) were cut using a cyrostat (Leica CM3050; Leica Microsystems, Nussloch, Germany) at −22 °C and mounted across polylysine-coated glass slides (VWR International, Dublin, Ireland) allowing for a distribution of tissue on a given slide.
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6

Optimizing Cryosectioning Workflow for MSI

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A series tissue sections (12 μm thickness) derived from 8-week-old CD1 mice (Vital River Laboratories, Beijing, China), TBI model and normal control were prepared at −20 °C using a cryostat (Leica CM3050, Leica Microsystems Inc., Wetzlar, Germany) followed by thaw-mounting on glass slides for the optimization of device conditions and MSI. The slides were stored in closed containers at −80 °C until MSI analysis. Adjacent sections were collected onto glass slides and performed with Nissl’s staining for comparisons of tissue morphology.
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7

Thionin Staining of Rat Hippocampus

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Rats were deeply anaesthetized with isoflurane until they stopped breathing and perfused with 120ml of cold saline, and then 60ml of 4% paraformaldehyle (PFA). Rats were decapitated and brains were extracted from the skull and fixed in 4% PFA overnight in a brain vial; the PFA was then replaced with 30% sucrose for cryoprotection. The brains were considered ready for staining when they had sunk to the bottom of the vial.
Brains were sliced coronally at 50um sections in a cryostat (Leica CM3050, Leica Microsystems) across the dorsal and ventral hippocampi, ready for thionin staining. Brain slices were hydrated in decreasing concentrations of ethanol, submerged in 0.1% thionin solution (pH4) for 75 seconds, and then dehydrated in increasing concentrations of ethanol. Slices were then immersed in xylene for 10 minutes and coversliped.
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8

Spinal Cord Injury Mouse Model

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At 12 weeks after spinal cord injury, mice were anesthetized with 16% solution of sodium pentobarbital (Narcoren, Merial, Hallbergmoos, Germany, 5 μL/g body weight). The animals were transcardially perfused with fixative consisting of 4% formaldehyde and 0.1% CaCl2 in 0.1 mol/L cacodylate buffer, pH 7.3, for 15 minutes at room temperature. Following perfusion, the spinal cords were left in situ for 2 hours at room temperature, after which they were dissected out and post-fixed overnight (18–22 hours) at 4°C in the same solution used for perfusion. Tissue was then immersed into 15% sucrose solution in 0.1 mol/L cacodylate buffer, pH 7.3, for 2 days at 4°C, embedded in Tissue Tek (Sakura Finetek, Zoeterwoude, NL, USA), and frozen by 2-minute immersion into 2-methyl-butane (isopentane) precooled to −80°C. Serial transverse or longitudinal sections were cut using a cryostat (Leica CM3050, Leica Instruments, Nußloch, Germany). Sections, 25-μm-thick, were collected on SuperFrost Plus glass slides (Roth, Karlsruhe, Germany). Sampling of sections was always done in a standard sequence so that six sections 250 μm apart were present on each slide.
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9

Golgi-Cox Staining of Fetal Sheep Brain

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For each fetus, one block from the left cerebral hemisphere (approximately section 1160 according to the Michigan State University sheep brain atlas1) was processed for Golgi-cox impregnation (FD Rapid Golgi Stain Kit; FD Neurotechnologies, Inc., Columbia, MD, United States). Blocks were serially sectioned (100 μm thick) in the coronal plane with a cryostat (Leica CM3050, Leica Microsystems, Pty Ltd., Australia). Sections were mounted onto gelatin-coated slides, processed for Golgi visualization using materials supplied in the kit, dehydrated in graded alcohols and coverslipped.
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10

ROS Detection in Murine Liver

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The levels of ROS production in the liver of the remaining three mice in different groups of mice were detected using dihydroethylene (DHE) staining. Briefly, 100 µM DHE (0.1 ml/10 g; Beyotime Institute of Biotechnology) was injected through the tail vein in each group of mice (n=3). After 30 min, the animals were sacrificed by cervical dislocation and the livers were removed and embedded in optical cutting temperature compound (Sakura Finetek USA, Inc.) at −20°C for 2 h. The liver tissues were subsequently cut into 10-µm sections using a frozen microtome (Leica CM3050; Leica Microsystems GmbH) at −20°C. The sections were washed with PBS and incubated with 5 mg/l Hoechst 33258 solution (Sigma-Aldrich; Merck KGaA) at room temperature for 5 min. Then, the sections were sealed with anti-fluorescence quenching agent (Beyotime Institute of Biotechnology) and visualized using a fluorescence microscope (Olympus IX72; Olympus Corporation; magnification, ×400). Image Pro Plus 6.0 software (Media Cybernetics, Inc.) was used to detect the average density of red fluorescence from three randomly selected fields of view in each section to indicate ROS production.
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