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Alexa fluor 488 donkey anti mouse igg

Manufactured by Thermo Fisher Scientific
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Alexa Fluor 488 donkey anti-mouse IgG is a secondary antibody conjugated with the Alexa Fluor 488 fluorescent dye. It is designed to bind to mouse immunoglobulin G (IgG) for use in various immunoassay and imaging techniques.

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184 protocols using alexa fluor 488 donkey anti mouse igg

1

Identification of Circular RNA in DRG Neurons

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L4/L5 DRGs were cut into 20-μm sections which were fixed in 4% PFA at RT for 30 min and rinsed with DEPC-treated PBS twice and then incubated in a mixture (30% hydrogen peroxide: methyl alcohol = 1:50) at RT for 30 min, rinsed with DEPC-treated H2O for three times, and digested in 1 μg/ml Protease K at RT for 10 min. After permeabilization with 0.3% Triton X-100 in PBS for 15 min, the sections were prehybridized in hybridization buffer for 3 h at 40 °C. Hybridization buffer with 400 nM cy3-labeled circ-Spidr probe (RiboBio) was added dropwise to the sections, which were then hybridized at 40 °C overnight. The next day, the sections were rinsed three times in 4× SSC, twice in 2× SSC, and once in 1× SSC at 45 °C. The sections were blocked with 2% BSA in PBS for 1 h at RT and then incubated with mouse anti-NeuN antibody (MAB377, 1:500, MilliporeSigma) overnight at 4 °C. On the third day, after the samples were washed three times with PBS, they were incubated with Alexa Fluor 488 donkey anti-mouse IgG (A21202, 1:1000, Thermo Fisher Scientific) for 1 h at RT. The sections were washed three times in PBS. Finally, immunofluorescence images were captured using a microscope.
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2

Molecular Markers in Cell Signaling

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Verteporfin (#SML0534) and antibodies recognizing β-actin (#a2228), FLAG® M2 (#F1804), glyceraldeyde-3-phosphate dehydrogenase (GAPDH, #CB1001) and 17-β-estradiol (#E1024) were purchased from Merck (Billerica, MA, USA). Antibodies recognizing YAP/TAZ (#8418), p-YAP (Ser127) (#4911), zinc finger E-box binding homeobox1 (ZEB1, #3396), Src (#2108), p-Src (Tyr416) (#2101), horseradish peroxidase-conjugated donkey anti-rabbit IgG (#7074), and horseradish peroxidase-conjugated donkey anti-mouse IgG (#7076) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies recognizing E-cadherin (#610181) and N-cadherin (#610920) were purchased from BD Biosciences (San Jose, CA, USA). The antibody recognizing p-YAP (Tyr357) (ab62751) was purchased from Abcam (Cambridge, United Kingdom). Antibodies recognizing Vimentin (sc-32322) was purchased from Santa Cruz biotechnology (Dallas, TX, USA). V5 Tag (#A190-120A), Alexa Fluor 488 donkey anti-mouse IgG and Alexa Fluor 568 goat anti-rabbit IgG were purchased from Thermo Fisher Scientific (Cleveland, OH, USA). Saracatinib (#S1006) and PP2 (#S7008) were purchased from Selleckchem (Houston, TX, USA). G418 was purchased from Biosesang (Gyeonggi-do, South Korea).
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3

Immunofluorescence Staining and Quantification of P-gp and NF-κB

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Cells were washed with PBS twice and fixed for 10min in PBS solution containing 4% paraformaldehyde and 4% sucrose, and permeabilized with 0.25% triton-100× for another 10min at room temperature. After washing 3 times with PBS, cells were blocked with 10% horse serum for 1h at room temperature. Next, cells were incubated overnight at 4°C with primary antibodies prepared in 10% blocking solution containing 0.1% tween-20. Primary antibodies used including mouse monoclonal P-gp antibody C219 (Covance; MA) at 1:50 dilution, and rabbit monoclonal NFκB antibody (Abcam, MA) at 1:100 dilution. Subsequently cells were washed three times with PBS and incubated for 1h at room temperature with secondary antibodies either Alexa Fluor 488 donkey anti-mouse IgG (Thermo Fisher Scientific Cat# R37114, RRID:AB_2556542) or Alexa Fluor 546 donkey anti-rabbit IgG (Thermo Fisher Scientific Cat# A10040, RRID:AB_2534016) at 1:200 dilutions followed by washing cells three times with PBS. Transwell membranes were collected and mounted with Prolong Gold DAPI antifade solution (Life technologies, CA) and images were captured using Olympus Fluoview 1000 Confocal laser scanning microscope (Olympus, PA) at a total magnification of 400×. Total signal of P-gp was quantified using NIH ImageJ version 1.44 software as described previously (Noursadeghi et al., 2008).
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4

Immunofluorescence Antibody Validation Protocol

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All antibodies were purchased from Cell Signaling Technology (Danvers, MA) unless otherwise indicated. These include mouse IgG for α-tubulin (DM1A), V5-Tag (E9H8O), GAPDH (6C5) (Santa Cruz Biotechnology, Santa Cruz, CA), PP2A-C subunit (1D6, EMD Millipore, Burlington, MA), PR55α (2G9, EMD Millipore), p53 (DO1, Santa Cruz Biotechnology), FBXL20 (D-4, Santa Cruz Biotechnology), Ubiquitin antibody (P4D1, Santa Cruz Biotechnology), c-Myc (phospho-S62) (33A12E10, Abcam, Cambridge, UK); rabbit IgG for Ki67 (ab16667, Abcam), p53 (FL-393), PP2A-PR55α Subunit [(100C1) and (#4953)], c-Myc (D3N8F), c-Myc (phospho-T58, ab85380), FBXL20 (SCRAPPER) (ProSci, Poway, CA), FBXL16 Antibody (ProSci). Secondary antibodies for immunofluorescence studies included Alexa Fluor 594 Donkey Anti-rabbit IgG and Alexa Fluor 488 Donkey Anti-mouse IgG from Thermo Fisher Scientific. Nuclei were visualized by DAPI (Sigma-Aldrich, St. Louis, MO).
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5

Porcine Coronary Artery Restenosis Model for METTL3 Analysis

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The porcine model of restenosis after stenting was generated as our previously described.22, 23 After porcine were sacrificed, the coronary arteries were removed from the heart and fixed with 10% formalin, then paraffin embedded and sectioned into 5 μm. The sections were then stained with haematoxylin–eosin, and observed under the microscope. The expression and localization of METTL3 were determined according to a previously described immunofluorescence method.3, 4 Slides with tissue sections were dewaxed with paraformaldehyde and gradually hydrated with ethanol. Then, the slides were placed in EDTA repair solution at 100°C for 20 min. After the slides were blocked with blocking buffer (5% bovine serum albumin) at 37°C for 30 min, the primary antibody METTL3 (Proteintech 15,073‐1‐AP, 1:200 dilution) and α‐SMA (Abcam, ab7817, 1:200 dilution) were incubated for overnight at 4°C. Subsequently, the secondary antibodies (Alexa Fluor 568 donkey anti‐Rabbit IgG [H + L; Thermo Fisher Scientific, A10042] for METTL3 and the Alexa Fluor 488 donkey anti‐mouse IgG [H + L; Thermo Fisher Scientific, A21202] for α‐SMA) were incubated for 60 min at 37°C and followed with diamidino‐phenyl‐indole (DAPI) staining in the dark. After washing with PBS, an Olympus light microscope BX53 system was applied for images capture.
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6

Immunofluorescence Staining of DNA Damage

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After microirradiation, cells were incubated at 37°C for 10 min and fixed immediately with 10% formaldehyde in phosphate-buffered saline (PBS) at room temperature for 15 min. Fixed cells were permeabilized with 0.3% Triton X-100, 1% bovine serum albumin, 100 mM glycine and 0.2 mg/mL ethylenediaminetetraacetic acid in PBS on ice for 10 min. The cells were subsequently digested with RNase A at 37°C. Cells were blocked with Block ACE (DS Pharma. Biomedical Co., Osaka, Japan) in PBS for 1 hr at room temperature. For immunofluorescence staining, cells were incubated simultaneously for 90 min at room temperature with primary antibodies rabbit γH2AX (sc-101696, Santa Cruz Biotechnology, Dallas, TX) and mouse 53BP1 (612523, BD Transduction Laboratories, San Jose, CA), washed with PBS-T (PBS + 0.05% Tween20) three times, and incubated for 60 min at room temperature with Alexa Fluor 647 donkey anti-rabbit and Alexa Fluor 488 donkey anti-mouse IgG (A-31573 or A-21202, Thermo Fisher Scientific Inc., Waltham, MA). After washing twice with PBS-T and then PBS, coverslips were mounted onto glass slides using Vectashield mounting medium containing 4′-diamino-2-phenylindole (Vector Laboratories, Burlingame, CA), and subsequently visualized to detect the different DNA damage markers.
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7

Immunohistochemistry of Rodent Brain

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Animals were deeply anesthetized with sodium pentobarbital (nembutal; 80 mg/kg, i.p.) and perfused with PBS (0.1 M) and 4% paraformaldehyde in PBS (4% PFA/PBS, 4°C, 500 ml). The dissected brains were post-fixed at 4°C in 4% PFA/PBS and cryo-protected at 4°C in 30% sucrose/PBS. Coronal sections (50 μm) were prepared using a vibrating blade microtome (Leica, CM1950). All sections were post-fixed for 20 min at 4°C in 4% PFA/PBS. Sections were blocked and permeabilized for 1 hour at room temperature in a PBS solution containing 5% bovine serum albumin (BSA) and 0.3% Triton X-100. The primary antibody incubation was performed by incubating the sections overnight at 4°C in a PBS solution containing 5% BSA, polyclonal anti-RFP (1:500, Rockland, Cat. No. 600-401-379), and anti-PV (1:500, Swant, Cat. No. 235). The secondary antibody incubation was performed for 1 hr using Alexa Fluor 594 donkey anti-rabbit IgG and Alexa Fluor 488 donkey anti-mouse IgG (1:500, Thermo Fisher Cat. No. A32754 and Cat. No. A21202, respectively). Nuclei were stained with DAPI (Sigma-Aldrich, Cat. No. D9542) shown in the blue channel. Brain sections were mounted onto slides using Fluoromount-G mounting medium (SouthernBiotech, Cat. No. 0100–01).
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8

Immunofluorescence Analysis of DREADD Specificity

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PV-IN or PN specificity of DREADDs activation was controlled by co-labelling of PV or αCamKII with mCherry in 30 μm-thick coronal sections as in [22 (link)]. Primary antibody: PV (1:500; Sigma-Aldrich; P3088); αCamKII (1:200; Thermo Fisher; #13-7300). Secondary antibodies: Alexa Fluor 488 donkey antimouse IgG (1:200; Thermo Fisher Scientific; #R37114), NeuroTrace 435/455 (1:200; Thermo Fisher Scientific; #N21479). Images were acquired by confocal laser scanning microscopy (Zeiss LSM 700; Carl Zeiss AG, Feldbach, Switzerland) and analyzed using ImageJ software (https://imagej.nih.gov/ij/).
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9

Immunofluorescence Imaging of Kv1.3 and Mitochondria

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Cells were cultured on poly-l-lysine coated coverslips until 30–40% confluent. Control HEK293 and HEK293/Kv1.3 cells were fixed (4% paraformaldehyde, 20 min), washed (3 × 1 ml DPBS) and incubated in DPBS (0.05% Triton X100, 10% NGS; 20 min). Cells were washed (DPBS, 1% NGS) Anti-Kv1.3 Clone L23/27, mouse monoclonal (1:500; cat no. 75-009, NeuroMab, Antibodies Incorporated, UK) or Anti-ATPB rabbit polyclonal (1:500; cat no. ab128743, Abcam, UK) antibody were added in 1% NGS and incubated in a humidified chamber overnight at 4 oC. Coverslips were washed with DPBS with 1% NGS (3 x 1ml). Alexa Fluor 488 Donkey anti-Mouse IgG (cat no. R37114, ThermoFisher) secondary antibody or HRP goat anti-rabbit IgG H + L secondary antibody (cat no. 926-80011 LI-COR Biosciences UK Ltd, Cambridge, UK) was added (1:2000 in 1% NGS) for 1 h. Cells were washed with DPBS with 1% NGS (3 × 1 ml), and mounted with VECTASHIELD Mounting Medium with DAPI (VECTOR Laboratories Ltd, UK). Mitochondria were imaged following incubation with MitoTracker Red CMXRos (ThermoFisher) (100 nM; 30 min; 37 °C; 5% CO2). Excitation/emission wavelengths: 579/599 nm. Imaging was perfomed using a Zeiss LSM800 microscope and processed using Zen Lite 64 (Zeiss, UK) and Image J.
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10

Primary and Secondary Antibodies for Viral Protein Detection

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Commercially available primary antibodies used in this study are as follows: α-Beta Actin (Sigma Aldrich: A5441), α-RTN3 (Santacruz: sc374599), α-PDI (Thermofisher: P7496), α-DENV NS3 (Genetex: GTX629477), α-DENV NS4B (Genetex: GTX124250), α-dsRNA (Scicons: 10010500), α-ZIKV NS2B (Genetex: GTX133318), α-ZIKV NS1 (Genetex: GTX634158), α-ZIKV NS3 (Genetex: GTX133320), α-ZIKV NS4A (Genetex: GTX133704), α-ZIKV NS4B (Genetex: GTX133321), α-ZIKV NS5 (Genetex: GTX133327). Commercially available secondary antibodies and IF reagents used in this study are as follows: Goat anti–rabbit IgG-HRP (Sigma Aldrich: A6154), Goat anti–mouse IgG-HRP (Sigma Aldrich: A4416), Alexa Fluor 488 donkey anti-mouse IgG (Thermofisher: A-21202), Alexa Fluor 488 donkey anti-mouse IgG2a (Thermofisher: A-21131), Alexa Fluor 568 donkey anti-rabbit IgG (Thermofisher: A-10042), Alexa Fluor 568 donkey anti-mouse IgG1 (Thermofisher: A-21124), Alexa Fluor 647 donkey anti-rabbit IgG (Thermofisher: A −31573), ProLong® Gold Antifade Reagent (Cell Signaling Technology: #9071) and DAPI (Sigma Aldrich: D9542). The DENV NS1-specific antibody was produced as described earlier (Welsch et al., 2009 (link)). DENV NS3-, NS4B- and NS5-specific antibodies were used for western blot analyses as described elsewhere (Miller et al., 2006 (link)).
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