The largest database of trusted experimental protocols

24 protocols using biomate 3s spectrophotometer

1

Quantitative Metabolite Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pyruvate contents were measured according to a previously described method [66 (link)]. The ABA (abscisic acid) contents were measured by following a previously described protocol [67 ]. The GB (glycine betaine) and TSS (total soluble sugar) were measured by using commercial kits (Nanjing Jiancheng Bioengineering Institute, Nanjing, China), while the glutathione was measured according to the previously described protocol [68 ]. A bio-mate 3 s spectrophotometer (Thermo Scientific, Waltham, MA, USA) was used to check the optical density (OD).
+ Open protocol
+ Expand
2

Antibiotic Adaptation in E. coli MG1655

Check if the same lab product or an alternative is used in the 5 most similar protocols
Escherichia coli K12 strain MG1655 was used in this study. Seed cultures were grown in LB medium (Bio Basic) and used to inoculate pre-cultures in appropriate growth media without antibiotics. After overnight growth, pre-cultures were diluted (500 − 1,000×) to fresh media and allowed to resume exponential growth for at least three generations before being diluted into media containing antibiotics. Cells were adapted to exponential growth in antibiotics and grown in adapted growth for four generations before growth rate measurements were taken. Cells were grown in 3 ml of culture media at 37°C in 20-mm test tubes, shaken in a water bath (MaxQ 7000, Thermo-Fisher) at 250 rpm. Growth rate was monitored by measuring OD600 on a Biomate 3S spectrophotometer (Thermo-Fisher) over time, with cell viability corroborated by plating. The translational mutant strain appearing in Fig6 is derived from a mutant exhibiting pseudo-dependence on streptomycin and a corresponding decreased translation rate in the absence of streptomycin (Ruusala et al, 1984 (link); Scott et al, 2010 (link)). The mutation (in rpsL) was moved from strain GQ9 (Scott et al, 2010 (link)) (also known as CH349 or UK317 (Ruusala et al, 1984 (link))) to our background strain (MG1655) via P1 transduction and selection on streptomycin.
+ Open protocol
+ Expand
3

Colorimetric Mercury Quantification in Cell Supernatants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mercury quantification in supernatants of non-immobilized cell treatments was performed by producing a mercury dithizonate complex in Triton X-114 (Hg-Dz), which could be read by absorbance measures using a UV–vis spectrometer (BioMate 3S Spectrophotometer, Thermo Fisher Scientific, Waltham, MA, USA). Preliminarily, dithizone solutions (Dz) were prepared by dissolving 5 mg in different solvents (methanol, ethanol, butanol, toluene, carbon tetrachloride, chloroform, dichloromethane, and micellar medium of Triton X-114) to identify optimum polarity medium whose absorption spectrum of dithizone would not interfere with Hg-Dz complex at the supernatant pH. Reaction was read at 508 nm after 30 s. This colorimetric method was validated by inductively coupled plasma optical emission spectrometry (ICP-OES, iCAP 6500, Thermo Scientific, Waltham, MA, USA) under routine conditions for mercury analysis. All working standard solutions were prepared using Hg Panreac standard (lote: R3861502) and measurements were made in triplicate.
+ Open protocol
+ Expand
4

Rapid Trehalose Detection in P. mume

Check if the same lab product or an alternative is used in the 5 most similar protocols
To monitor the changes of trehalose, the rapid detection kit for trehalose content (Nanjing Jiancheng Biology Research Institute, Nanjing, China) was applied for trehalose content measurement. Following the manufacturer’s instructions, the trehalose extracting solution was first acquired from the leaf, stem, and root tissues of P. mume and then used for the subsequent chromogenic reaction. After the chromogenic reaction, the BioMate 3S Spectrophotometer (Thermofisher Scientific Inc, Waltham, MA, USA) was used to detect the optical density at 620 nm. All experiments were conducted with three replicates. The collected data were finally processed using Office 2010 and the analysis of significant differences was conducted with the SPSS 22.0 (SPSS Inc., Chicago, IL, USA) software by one-way ANOVA and t-test.
+ Open protocol
+ Expand
5

Cytotoxicity Evaluation of GluNPs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cytotoxicity testing was conducted using the Cell counting kit (CCK)-8 assay (Dojindo, Tokyo, Japan), according to the manufacturer’s instructions. The normal cell line HEK293T and cancer cell line HeLa were seeded at 5 × 103 cells per well onto a 96-well plate in Dulbecco’s modified Eagle’s medium (DMEM), containing 10% fetal bovine serum (Gibco life Science, Waltham, MA, USA) and 1% penicillin-streptomycin. The CCK-8 solution was used to determine the cell viability for 2 h with 5% CO2 at 37 °C after treatment with 0.0625, 0.125, 0.25, and 0.5 mg/mL of GluNPs at 37 °C under 5% CO2 over 24 h. The control group was not treated, and 50% DMSO was used as a positive control. After 2 h, 100 μL medium was transferred into a new 96-well plate, and the absorbance was measured at a wavelength of 450 nm using a Biomate 3S spectrophotometer (ThermoFisher, Waltham, MA, USA) to determine the maximum absorption wavelength of the GRs, PNIPAM/GR, and PNIPAM/GR-DOX.
+ Open protocol
+ Expand
6

Glutathione Estimation in AML12 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reduced glutathione (GSH) estimation in the cell lysate was performed by the method of Beutler et al [33 (link)]. AML12 cells (1 × 105 cells/well) were maintained in six-well plates for 120 min in the presence of 1 mM H2O2 alone and in combination with VU 0255035 or vehicle (DMSO). At the end of the incubation, cells were lysed using a polytron homogenizer and mitochondrial and post-mitochondrial fractions were prepared using isolation buffer (250mM Sucrose, 10 mM Tris HCL pH 7.4, and 0.1mM EGTA). Precipitating reagent was added to mitochondrial and post-mitochondrial fractions and centrifuged at 3000 rpm for 15 min. Equal volumes of supernatant, 0.04 % dithionitrobenzoic acid (in 1% sodium citrate) and 0.3 M Na2HPO4 were mixed, and incubated at room temperature for 10 min. Absorbance was read at 412 nm (BioMate 3S Spectrophotometer; Thermo Scientific, USA). A GSH standard curve was used for calculation of cellular GSH content.
+ Open protocol
+ Expand
7

Spectrophotometric Analysis of MTM Dimerization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Concentrations of MTM, its analogues and Pre MTM B were determined by measurements based on the dry material mass. The concentrations of MTM and its analogues were consistent with the measurements of absorbance at 400 nm using a Thermo Scientific Biomate 3S spectrophotometer assuming the molar extinction coefficient of 10,000 M−1 cm−1. The dimerization assays were carried out in 40 mM Hepes pH 7.0, 100 mM NaCl, by titrating MgCl2 into a solution of MTM or analogue at constant concentration at 21 °C. The concentrations of MTM, MTM SDK, Pre MTM B, MTM SA-Trp, and MTM SA-Ala were 1 μM, 5 μM or 10 μM, as specified in the text. The dimers were more stable in Fe2+ than in Mg2+; therefore, lower concentrations of the divalent metal ion were used, as specified. Fluorescence of MTM and its analogues, generated for the excitation wavelength of 470 nm and emission wavelength of 540 nm, was measured on a SpectraMax M5 microplate reader. All experiments were carried out in triplicate.
+ Open protocol
+ Expand
8

Cultivating Pseudomonas syringae

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pseudomonas syringae pathovar glycinea (ATCC® 8727™) culture was obtained from American Type Culture Collection (ATCC) and grown on nutrient agar media at 30 °C for 24 h [12 (link),87 ]. Colony forming units (CFU) and optical density at 600 nm (OD600) were measured using BioMate™ 3S Spectrophotometer (ThermoFisher Scientific, Waltham, MA, USA).
+ Open protocol
+ Expand
9

Quantitative Dye Characterization Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
DiR dye was dissolved in DMSO, and the concentration was quantified with a Thermo Scientific BioMate 3S Spectrophotometer. The dye was then serially diluted in deionized water in a 96-well plate; each well contained 100µL of the diluted dye solution. Alternative, the dye dilutions were applied as 5mm spots on a nitrocellulose membrane, and integrated fluorescence emission over the specified wavelength range was measured using FONIRS. In addition, the membranes were scanned with Li-COR Odyssey, and the integrated density of signal in the 800nm channel, 16-bit, was measured using ImageJ software.
+ Open protocol
+ Expand
10

Growth Kinetics of Bacterial Strains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Strains were grown overnight in LB (E. coli) or TSB (S. aureus) at 37°C, shaking at 225 rpm. For initial experiments with S. aureus (Datasets D3 & D4), strains were diluted to an A600 value of 0.05 in prewarmed TSB, after which A600 was measured at the times specified. A600 was measured on a BioMate 3S spectrophotometer (Thermo Scientific). For experiments with S. aureus in balanced growth (Datasets D5-D8), overnight cultures were diluted in TSB first to 0.005, then after 3 hr diluted again to 0.005 before measuring A600 at the time intervals specified. For E. coli growth curves, strains were diluted to an A600 value of 0.05 and incubated for 2 hr in the desired medium then diluted again in the same prewarmed medium to an A600 value of 0.005, after which A600 was measured at the time intervals specified. Where E. coli cells were diluted into a different medium, cells were washed once with PBS prior to dilution. To measure growth rate, a linear model log2(A600) ~ mT + c was calculated for the linear portion of this relationship (where T is the time in minutes) using the LINEST function in Microsoft Excel and the doubling time in minutes td was calculated as 1/m.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!