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Clams system

Manufactured by Columbus Instruments
Sourced in United States

The CLAMS system is a comprehensive research platform designed to measure and analyze various physiological parameters in laboratory settings. It provides real-time data collection and monitoring capabilities for researchers to study the metabolic activity, energy expenditure, and related behaviors of their research subjects.

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29 protocols using clams system

1

Indirect Calorimetry of Metabolic Rates

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To measure metabolic rates, metabolic parameters in the treated mice were analyzed with indirect calorimetry43 (link), 44 (link) using the Comprehensive Laboratory Animal Monitoring System (CLAMS) system (Columbus Instruments, Columbus, OH, USA) at normal temperature (22℃). The mice were individually housed 2–3 days before the experiment for habituation and then fed the same diet (chow or HFD) and water provided ad libitum in clear respiratory chambers (20.5 × 10.5 × 12.5 cm). O2 consumption, CO2 production, energy expenditure, heat, and activities of the experimental animals were measured for 24 h. These data were collected with Oxymax for Windows (version 5.40.14, Columbus Instruments) and analyzed with CLAX software (version 2.2.15, Columbus Instruments). Based on the collected data, the respiratory quotient or exchange ratio (CO2/O2) and delta-heat values were calculated using the CLAX software.
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2

Circadian Rhythms in Diet-Induced Obesity Mice

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For DIO studies, 8–10 week old mice were provided ad libitum access to high fat diet (HFD; 60% energy from fat; DIO Rodent Purified Diet, IPS Ltd) or normal chow (NC) for 2, 8, or 16 weeks. Prior to tissue collection, mice were placed in constant darkness (DD) and tissues collected every 4 h (n = 5–10/time-point/diet condition). In selected experiments, body temperature (Tb) and locomotor activity were recorded using radiotelemetry (Data Sciences International), and metabolic gas exchange measured by indirect calorimetry using the CLAMS system (Columbus Instruments)35 (link). Food intake was monitored using the Labmaster Metabolism Research Platform (TSE systems), with meal size and feeding events (see Supplementary Fig. S1) recorded over 6 days. For ob/ob studies, mice were maintained on NC throughout, and locomotor activity was recorded in home cages using infrared beam-break sensors.
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3

Body Composition and Metabolic Profiling

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Body weight was monitored weekly and body composition was determined using an EchoMRI-100™ analyzer (EchoMRI Medical Systems) at the end of the treatment period.
Mice were placed in a CLAMS system (Columbus Instruments) to assess VO2 consumption, VCO2 production, the respiratory exchange ratio (RER) as well as food intake and spontaneous locomotion (number of breaks of infrared beams in XYZ dimensions).
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4

Metabolic Phenotyping of Cold Tolerance

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Body composition was measured using a Bruker MiniSpec NMR. Whole-body VO2, RER, and activity levels were measured using a CLAMS system (Columbus Instruments). Cold-tolerance testing was carried out in a 4 °C cold room. Prior to cold-tolerance testing, the mice were injected with a temperature-sensitive transponder (Bio Medic Data Systems, IPTT 300). One week after the injections, the mice were transferred to a 4 °C cold room for 6–8 h, and their core temperature was assessed using a Reader-Programmer (Bio Medic Data Systems, DAS 8007). The mice were single-housed in cages containing bedding with access to food and water throughout the cold-tolerance test. For long-term cold-exposure experiments, the mice were acclimated to the cold following a protocol used to acclimate UCP1 null mice to the cold [25 (link)]. Briefly, the mice were housed in a rodent incubator at 18°C for 2 weeks, after which the temperature was lowered to 6.5°C for 7 days. The mice were euthanized after a 4 h fast and their tissues were harvested. For glucose-tolerance testing, their blood glucose levels were measured following an IP injection of 20% glucose (5 μL/g body mass) at time points 0, 15, 30, 60, and 120 min.
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5

Metabolic Monitoring of Mice

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The assessment of the metabolic status of mice was performed with a Columbus CLAMS system (Columbus, OH, USA). At the beginning of the experiment, mice were acclimated to the system for 24 h. The animals were maintained under the 12 h light/dark cycle with free access to food and water. The rate of O2 consumption (VO2), rate of CO2 production (VCO2), respiratory exchange ratio (RER, VCO2/VO2), and the level of energy expenditure were measured over the next 24 h to monitor the experimental process. The activity level of mice in all groups was evaluated by the automatic recording of revolutions of the running wheel.
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6

Comprehensive Metabolic Profiling in Mice

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Fat and lean mass was determined by echoMRI-100V. CT Scan was performed on Trifoil eXplore RS9 microCT system. Insulin tolerance test was performed on 6 h fasted mice and insulin (Humulin-R, Eli Lilly) was injected at 1.25 U/kg of body weight. Glucose tolerance test was performed on overnight fasted mice, glucose was injected at 1 mg/kg of body weight. Blood from mouse tail was taken and glucose levels were measured using Contour glucometer (Bayer). Metabolic cage experiments to measure physical activity were carried out on CLAMS System (Columbus). Liver TAG content was assessed using Triglyceride Colorimetric kit.
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7

Measuring Energy Expenditure in Mice

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Mice were fed a semi-purified diet based on AIN93G (200 g casein/kg; 70 g soybean oil/kg; metabolizable energy density 3640 kcal/kg; Research Diets). Daily food intakes (averaged over a minimum of 3 d) were measured before and during EE measurements. Food intakes were determined from the change in weight of food cups, corrected for spillage. Food intake during the EE measurements used the automated in-cage feeding assembly of the CLAMS system (Columbus Instruments, described at www.bcm.edu/cnrc/mmru).
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8

Indirect Metabolic Measurements in Mice

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Metabolic parameters were measured indirectly by determining Volume O2 consumption (VO2) and Volume CO2 production (VCO2), respiratory exchange ratio (RER) as well as X-Ambulatory counts (X AMB) using the CLAMS system (Columbus Instruments, Columbus, OH, USA). Mice were supplied with a sufficient amount of ground standard chow (Lab Diet Rodent Chow 5001) for the duration of the analysis (three days). Computations were made on the middle 48 hours of the three day CLAMS procedure that the mice were subjected to, from approximately 0600 hours of the first day to 0600 hours of the third day. Heat production/energy expenditure (EE), RER average, average food intake (FI) per day, as well as X-Ambulatory locomotor activity per day (counts of movement made across the cage) were determined for each mouse in all groups. Group averages were compared by using a one-way ANOVA.
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9

Comprehensive Metabolic Profiling in Mice

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Fat and lean mass was determined by echoMRI-100V. CT Scan was performed on Trifoil eXplore RS9 microCT system. Insulin tolerance test was performed on 6 h fasted mice and insulin (Humulin-R, Eli Lilly) was injected at 1.25 U/kg of body weight. Glucose tolerance test was performed on overnight fasted mice, glucose was injected at 1 mg/kg of body weight. Blood from mouse tail was taken and glucose levels were measured using Contour glucometer (Bayer). Metabolic cage experiments to measure physical activity were carried out on CLAMS System (Columbus). Liver TAG content was assessed using Triglyceride Colorimetric kit.
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10

Metabolic Impact of Scheduled Feeding

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Indirect calorimetry in the CLAMS system (Columbus Instruments) was used to evaluate metabolic parameters and ambulatory locomotor activity during ad libitum, overnight fasted, or time and calorie restricted scheduled feeding (SF). All mice were on a 12:12 light-dark cycle with ad libitum access to food and water unless otherwise indicated. Lepr-cre; tdTomato mice were singly housed and acclimated to the CLAMS for 3 days prior to experiment start. The night before SF began, the SF cohort was fasted and cages were changed and thereafter were given 2–3 grams of food (PicoLab Rodent Diet 5053) at zeitgeber time (ZT) 6 for 10 days. The overnight fasted cohort had ad libitum food access until the night before sacrifice, when food was removed and cages were changed. We repeated this experiment a total of 3 times with 2 mice per condition each time (n = 6 mice / condition total).
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