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12 protocols using ab5605

1

Western Blot Analysis of Protein Targets

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Western Blotting was carried out using specific antibodies; Bcl-2 (D17C4, Cell Signaling, France), Bax (ab115193, Abcam, France), aconitase 2 (ab110321, Abcam, France), nitrotyrosine (05-233, Millipore, France), 4HNE (ab5605, Millipore, France), sirtuine-3 (D22A3, Cell signaling, France), sirtuine-1 (SC-9475, Cell signaling, France), phosphorylated sirtuine-1 (Sc-2314, Cell signaling, France), peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC1a, ab54481, Abcam, France), nuclear factor (erythroid-derived 2)-like 2 (NRF2, ab31163, Abcam, France), mammalian target of rapamycin (mTOR, 2983S, Cell signaling, France), phospho mTOR (5536P, Cell signaling, France), eNOS total (610296, BD Transduction, Le Pont de Claix, France) and eNOS phophorylated Ser1177 (C9C3; Cell-Signaling, Saint Quentin-Yvelines, France). Protein quantification level was expressed as ratio of total proteins loaded on precast gels with stain-free technology (BioRad, France). All blots were obtained by imaging with chemidoc and quantificated with ImageLab software (BioRad).
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2

Immunohistochemical Analysis of Skin Samples

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The skin explants were fixed in 10% neutral buffered formalin for 48 h at 4 °C, dehydrated and embedded in paraffin. Then, 5 µm-thick sections were deparaffinized in xylene and then rehydrated through a series of decreasing ratios of alcohols to water. The immunohistochemical analysis was performed as previously described [45 (link)]. The tissues were incubated with primary antibodies for 4HNE (dil. 1:400) (AB5605, Millipore Corporation, Burlington, MA, USA), type I collagen (dil. 1:200) (AB138492, Abcam, Cambridge, UK) and Filaggrin (dil. 1:50) (sc-66192, Santa Cruz Biotechnology, Inc., Dallas, TX, USA) in 0.25% BSA in PBS overnight at 4 °C, and with fluorochrome-conjugated secondary antibodies (Alexa Fluor 568, A11004 or Alexa Fluor 488, A11055) diluted 1:1000 in 0.25% BSA in PBS at room temperature for 60 min. Nuclei were stained with DAPI (dil. 1:50,000) (D1306, Invitrogen, Waltham, MA, USA) in PBS. Coverslips were mounted onto glass slides using Fluoromount-G™ Mounting Medium (00-4958-02, ThermoFisher Scientific, Waltham, MA, USA). The tissues were examined using a Zeiss Z1 AxioObserver LSM10 confocal microscope at 40× magnification, and the images were quantified using ImageJ software 1.53a (Java 1.8.0_172, National Institutes of Health, Bethesda, MD, USA).
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3

Immunohistochemical Analysis of Skin Biopsies

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Paraffin-embedded 4 μm sections of skin biopsies were deparaffinized in xylene and rehydrated in decreasing alcohol gradients. Antigen retrieval was achieved using heat-based epitope retrieval with sodium citrate buffer (Thermo Fisher Scientific, USA) (pH 6.0) at a sub-boiling temperature in a 500 W microwave for 10 min. After cooling, sections were washed in PBS, blocked with 5% BSA in PBS, and incubated with primary antibodies for 4HNE (dil. 1:500) (AB5605, Millipore), NFκB (dil. 1:500) (8242, Cell Signaling), AhR (dil. 1:500) (83,200, Cell Signaling), involucrin (dil. 1:50) (sc-21748, Santa Cruz), or filaggrin (dil. 1:50) (sc-66192) in 2% BSA in PBS. Sections were then washed in PBS and incubated with fluorochrome-conjugated secondary antibodies (dil. 1:1000) (Alexa Fluor 568 A11004 or Alexa Fluor 488 A11055) in 2% BSA in PBS at RT, and then washed with PBS. Nuclei were stained with DAPI (1,874,814, Invitrogen) in PBS, and sections were then washed with PBS. Sections were mounted using PermaFluor mounting media (ThermoFisher Scientific) and imaged on a Zeiss LSM10 microscope. Images were quantified using ImageJ.
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4

Oxidative Stress Analysis of OCCC Cells

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2×104 CTV-labeled OCCC cells were cultured alone, with 2×104 CD10- enMSCs, or with 2×104 CD10+ enMSCs on a coverslip in a 6-well plate. Erastin was added to the culture medium at 1μM. Day 3 after the co-culture, cells were fixed and incubated with anti-4-HNE (Millipore Cat# AB5605, RRID: AB_569332) overnight at 4C°. After washing with PBB (0.5% BSA in PBS), cells were incubated with AlexaFluor 546 conjugated secondary antibody (Thermo Fisher Scientific Cat# A-11056, RRID: AB_2534103) for 1 hour at room temperature.
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5

Oxidative Stress Response in Fibroblasts

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Fibroblasts were grown on coverslips at a density of 1 × 105 cells/mL, after 24 h of treatment with plain ETHO and ETHO-CoQ10, cells were exposed to 50 μM H2O2 for 1 h. After H2O2 exposure, the medium was changed with fresh medium and the cells were analyzed at three different time points (i.e., directly post exposure, 2 h and 6 h post-exposure). Afterwards, cells were fixed in 4% paraformaldehyde for 10 min at room temperature (RT). Cells were then permeabilized for 5 min at RT with PBS containing 0.2% Triton X-100, then the coverslips were blocked in PBS containing 1% BSA at RT for 1 h. Cells were then incubated with primary antibody for 4HNE (AB5605; Millipore Corporation, Burlington, MA, USA) (1.200) in PBS containing 0.5% BSA at 4 °C overnight. After washing, coverslips were incubated with appropriate secondary antibody (1:100) for 1 h at RT. Nuclei were stained with 1 μg/mL DAPI (Sigma-Aldrich, Merck, Darmstadt, Germany) for 1 min. Coverslips were mounted onto glass slides using anti-fade mounting medium 1,4 diazabicyclooctane (DABCO) in glycerin and examined by the Leica light microscope equipped with epifluorescence at 40× magnification. Negative controls for the immunostaining experiments were performed by omitting primary antibody. Images were acquired and analyzed with Leica software [41 (link)].
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6

Murine Bronchoalveolar Lavage Characterization

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Total cell counts in BAL was measured with the Coulter Counter (Beckman Coulter, Brea, CA, USA). A sample containing 3 × 104 BAL cells was added to cytospins (Shandon cytospin 3, Thermo Scientific, Rockford, IL, USA) and were manually differentiated by counting 400 cells in a blinded fashion. The following cytokines were measured in BAL by magnetic Luminex assay (R&D, Minneapolis, MN, USA): IFN-y, KC, MIP-1α, IL10, IL17A, IL6. Lung permeability was determined by measuring the high-molecular-weight protein IgM in BAL, a large protein that is absent in BAL of non-infected mice, by ELISA (Bethyl Laboratories, Montgomery, TX, USA), as described before [25 ]. BAL neutrophil degranulation was measured by myeloperoxidase (MPO) ELISA (DY3667, R&D). ROS-production was measured by quantitative western blot for detection of 4-Hydroxynenal (4HNE, AB5605, Millipore, Darmstadt, Germany) in BAL normalized for protein content by Bradford assay. 4HNE is produced under influence of ROS [26 (link)].
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7

Immunohistochemical Analysis of Skin Biopsies

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Paraffin-embedded 4 µm sections of skin biopsies were deparaffinized in xylene and rehydrated in decreasing alcohol gradients. Antigen retrieval was achieved using heat-based epitope retrieval with sodium citrate buffer (Thermo Fisher Scientific, Waltham, MA, USA) (pH 6.0) at a sub-boiling temperature in a 500-watt microwave for 10 min. After cooling, sections were washed in PBS, blocked with 5% BSA in PBS, and incubated with primary antibodies for 4HNE (dil. 1:400; AB5605, Millipore), MMP9 (dil. 1:200; NBP2-13173, Novus Biologicals), filaggrin (dil. 1:50; sc-66192, Santa Cruz Biotechnology, Inc.), in 2% BSA in PBS. Sections were then washed in PBS and incubated with fluorochrome-conjugated secondary antibodies (dil. 1:1,000) (Alexa Fluor 568 A11004 or Alexa Fluor 488 A11055) in 2% BSA in PBS at RT, and then washed with PBS. Nuclei were stained with DAPI (1874814, Invitrogen) in PBS, and sections were then washed with PBS. Sections were mounted using PermaFluor mounting medium (Thermo Fisher Scientific) and imaged on a Zeiss LSM10 microscope. Images were quantified using ImageJ.
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8

Quantifying Lipid Peroxidation via 4-HNE

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The cells were lysed in chilled radio-immuno-precipitation assay (RIPA) buffer supplemented with inhibitor cocktails (P8340, P2850 and P5726, Sigma Aldrich) (Azzam, de Toledo and Little 2001 (link)) and equal amount of protein were analyzed by SDS-PAGE gels followed by immunoblotting as per standard procedures. The primary antibody to 4-HNE (#AB5605, Millipore) was used to detect lipid peroxidation. Secondary antibodies conjugated with horseradish peroxidase (Bio-Rad and Santa Cruz Biotechnology, Inc) and the enhanced chemiluminescence system from GE Healthcare was used for protein detection. Luminescence was determined by exposure to X-ray film, and densitometry was performed with an EPSON scanner and National Institutes of Health Image J software (NIH Research Services Branch, Bethesda, MD). Staining of the nitrocellulose membranes with Ponceau S Red was used to verify equal loading of samples. Hydroxyalkenals, such as 4-HNE, are among the major products of lipid peroxidation (Voulgaridou et al. 2011 (link)).
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9

Quantifying Oxidative Stress Biomarker HNE

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4-Hydroxy-2-nonenal (HNE) levels were assessed by incubating the membrane with polyclonal anti-HNE antibody (1/3,000, AB5605; EMD Millipore). Specific proteins were detected with horseradish peroxidase-conjugated secondary antibody and a chemiluminescence kit.
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10

Oxidative Stress Biomarkers in hSCs

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Carbonyl groups, nitration and lipid peroxidation are usually used as biomarkers for oxidation and can be evaluated by measuring its resulting products, 2,4-dinitrophenyl (DNP), nitro-tyrosine and 4-hydroxynonenal (4-HNE), respectively. The content of these adducts in hSCs after exposure to l-theanine was evaluated by slot blot technique. The resulting PVDF membranes were incubated overnight (4 °C) with rabbit anti-DNP (D9656, Sigma-Aldrich, St. Louis, MO, USA), rabbit anti-nitro-tyrosine (#9691, Cell signaling Technology, Leiden, Netherlands) or goat anti-4-HNE (AB5605, Merck Millipore Temecula, USA) primary antibodies (dilution 1:5000). The immunoreactive proteins were detected separately and visualized with goat antirabbit IgG-AP (1:5000, A3687) or rabbit anti-goat IgG-AP (1:5000, A4187). Results were expressed as fold variation to the control group.
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