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10 protocols using frc 10a fraction collector

1

Preparative HPLC Mycotoxin Purification

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The mycotoxin-containing extracts dissolved in methanol were purified by preparative HPLC. The LC system was equipped with a LC-20APpump, SIL-10AP injector, FRC-10A fraction collector and a diode array detector (DAD) (Shimadzu, Kyoto, Japan), and a reverse-phase SHIM-pack PRC-ODS C18 column (20 mm × 250 mm, 5 μm, Shimadzu, Kyoto, Japan ) was used for mycotoxin seperation. The mobile phases were acetonitrile/methanol (50:50, v/v, solvent A) and H2O (solvent B) at a flow rate of 8 mL/min. The detector was set at λ1 = 220 nm for DON and its acetylated derivatives, and λ2 = 236 nm for ZEN. The linear gradient program started from 20% A for 8 min and increased to 80% A within 1 min, then held for 11 min. Finally, the initial composition of 20% A was re-established followed by equilibration for 5 min. LC retention times and UV absorbance profiles of the purified mycotoxins were compared to those of standard solutions. The targeted fractions were collected by a fraction collector. The LC-purified mycotoxin fractions were concentrated using a rotary evaporator at 45 °C, frozen overnight at −20 °C and then dried in a freeze–dryer for 48 h.
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2

Purification and Analysis of Compounds

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The dry residue (10 mg·mL−1) was injected on a LC-8A system (Shimadzu, Marne-la-Vallée, France) equipped with an Shimadzu SIL-10AE autosampler. The separation was performed on a Supelcosil™ABZ + Plus (5 μm × 25 cm × 21.2 mm) column (Sigma, St. Louis, MO, USA) at a flow rate of 17 mL·min−1. A gradient of H2O added with acetic acid (0.05%) (solvent A) and methanol (solvent B) was used for elution. Relative concentrations of solvents during the run were as follow: start at 100% solvent A; 30 min gradient to 50% solvent B; 10 min of isocratic 50% solvent B; 10 min gradient to 90% solvent B; 5 min gradient to 100% solvent A; 10 min of isocratic re-equilibration at 100% A. The fractions were collected with a FRC-10A fraction collector (Shimadzu). Detection was performed at 280 nm. For each fraction a second purification was performed to improve the purity. The collected fractions were diluted 10 times (MeOH/H2O) before LC-MS analyzes. For NMR analyzes, the collected fractions were dried by evaporation and then dissolved in MeOD–D2O (1:1).
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3

Analytical Techniques for Bioactive Fraction

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1H-NMR spectra were recorded on a Bruker 400 MHz spectrometer (Bruker, Billerica, MA, USA), using tetramethylsilane as internal standard and deuterated chloroform for dissolution of the sample. Thin layer chromatography (TLC) was carried out on Merck (Darmstadt, Germany) silica gel plates F254 (0.25 mm layer thickness) and visualized using UV lamp at 254 and 360 nm, and by spraying with vanillin-sulphuric acid. Column chromatography separations and purifications were performed on silica gel 60 (70–230 mesh) from Merck and on Sephadex LH-20 (Sigma, St. Louis, MO, USA). Prep-HPLC analysis was conducted to further purify the bioactive fraction. This was done with a 6AD preparative LC system equipped with a UV-visible (254 and 370 nm) detector, a 10AF manual injector, and a FRC-10A fraction collector (Shimadzu, Kyoto, Japan). Aliquots (200 μL) were injected in a C18 Jupiter analytical column of 250 mm × 4.6 mm × 10 μm (particle size).
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4

Synthesis and Purification of Peptide Compounds

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Boc-Cys(Trt)-OSu was purchased from Advanced Chemtech. Adipic anhydride was purchased from Wako Chemicals USA. All other reagents were purchased from Aldrich. Methylene chloride, triethylamine and N-methylmorpholine were distilled over CaH2. Reversed phase HPLC purification was performed with a Waters 2487 Dual l Absorbance detector, 600 controller and pump, and a Phenomenex Synergi 4μ Polar RP 80A HPLC column (250 × 21.2 mm,) using Waters Empower 3 software. Compound 3 was purified by reverse phase HPLC using a Shimadzu SPD-10AV UV-vis detector, a Shimadzu LC-8A pump, a Phenomenex Synergi 4μ Polar RP 80A HPLC column (250 × 30 mm), a Shimadzu SIL-10AP autosampler, and a Shimadzu FRC-10A fraction collector using Shimadzu Lab Solutions software. Compound 9 was purified and control reactions were monitored by reversed phase HPLC using a Shimadzu SPD-M20A prominence diode array detector, an LC-20AB prominence liquid chromotography pump, and a Phenomenex Synergi 4μ Polar RP 80A HPLC column (250 × 10.00 mm) using Shimadzu Lab Solutions software. A gradient of A (0.1 % TFA, H2O) and B (0.1 % TFA, 20:1 CH3CN, H2O) was used in all cases. NMR spectroscopy was performed on Bruker Avance DPX 300 or Bruker Avance DRX 500 NMR spectrometer.
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5

Semipreparative HPLC for compound purification

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Semipreparative HPLC was carried out on a Shimadzu system consisting of DGU-20A5R degassing unit, LC-20AT solvent delivery pump, SIL-10AF autosampler, CBM-20A controller, CTO-20AC column oven, SPD-M20A diode array detector and FRC-10A fraction collector (all Shimadzu, Kyoto, Kinki, Japan). Stationary phase was a Luna C-10(2) column with 250 × 10 mm and 10 µm particle size (Phenomenex). Mobile phase consisted of water (A) and acetonitrile (B). Elution at 4 mL/min and 35 °C column temperature started at 40% B, rising to 100% B at 20.0 min. All compounds of interest eluted within this gradient, followed by varying plateaus of 100% B (0–5 min duration) for column cleaning and re-equilibration at 40% B. Injection volume was 200 µL.
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6

Semipreparative HPLC for compound purification

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Semipreparative HPLC was carried out on a Shimadzu system consisting of DGU-20A5R degassing unit, LC-20AT solvent delivery pump, SIL-10AF autosampler, CBM-20A controller, CTO-20AC column oven, SPD-M20A diode array detector and FRC-10A fraction collector (all Shimadzu, Kyoto, Kinki, Japan). Stationary phase was a Luna C-10(2) column with 250 × 10 mm and 10 µm particle size (Phenomenex). Mobile phase consisted of water (A) and acetonitrile (B). Elution at 4 mL/min and 35 °C column temperature started at 40% B, rising to 100% B at 20.0 min. All compounds of interest eluted within this gradient, followed by varying plateaus of 100% B (0–5 min duration) for column cleaning and re-equilibration at 40% B. Injection volume was 200 µL.
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7

Isolation of Bioactive Compounds by VLC and HPLC

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Fractions of crude extracts H and E were obtained through vacuum liquid chromatography (VLC) on silica gel (0.040–0.063 mm, Merck, Darmstadt, Germany) with solvent mixtures of increasing polarity (hexane, ethyl acetate, methanol, all Roth, Germany). Fractions were controlled by thin-layer chromatography (silica gel 60 F254, Merck, Darmstadt, Germany) and those of similar substance patterns combined to yield five fractions for H (H1–H5) and 9 fractions for E (E1–E9).
Four compounds were isolated by semi-preparative HPLC using a Shimadzu CBM-20A controller, LC-20AT solvent delivery module, SIL-10AF autosampler, CTO-20AC column oven, SPD-M20A diode array detector, and FRC-10A fraction collector (all Shimadzu, Kyoto, Japan).
All separations were performed on a Luna C18(2) column, 250 × 10 mm, 10 μm (Phenomenex, Torrance, CA, USA) via isocratic elution with a flow rate of 4 mL/min, 25 °C column temperature; 200 μL injection volume.
Compounds 1 and 7 were obtained from E8 (VLC fraction with hexane:ethyl acetate:methanol = 4:80:16) by isocratic elution with a solvent composition of acetonitrile:water = 70:30 (v/v). Compound 4 was isolated with acetonitrile:water = 63:37 (v/v) from H4 (hexane:ethyl acetate:methanol = 36:60:4) and compound 6 with acetonitrile:water = 75:25 (v/v) from E2 (hexane:ethyl acetate = 70:30).
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8

Isolation of Malaria-Blocking Compounds

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The solvents used for extraction and separation were all from Thermo Fisher Scientific if not explicitly mentioned. The crude extract (1 g) was loaded into a column with the diameter and length of the column of 2.5 cm and 30 cm, respectively. The fine silica used for column chromatography was of particle size 40–63 µm (60 × 100 mesh) (Sigma Aldrich, St. Louis, MO, USA). Then, the column was eluted with 200 mL of hexane, followed by elution sequentially with 400 mL of 50% ethyl acetate in hexane, 500 mL of 5% methanol in dichloromethane and 300 mL of 100% methanol. All four fractions were dried, and their activities in blocking malaria transmission were determined as described above. The fractions containing active compounds against malaria transmission were further fractioned using a Shimadzu HPLC system (an LC-20AD pump, SPD-M20A UV and visible detector, and FRC-10A fraction collector, Shimadzu, Columbia, MD, USA). A semi-purification column (Gemini C18 250 mm × 10 mm, 5 μm, Phenomenex, Torrance, CA, USA) and a gradient solvent of MeOH-H2O (50:50–100:0) was used to obtain the pure bioactive compound.
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9

Advanced Analytical Techniques for Compound Characterization

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The Varian (Palo Alto, CA, USA) Mercury Plus 400 MHz and VNMRS 600 MHz FT-NMR spectrometers provided the NMR spectra. HRSIMS was performed by using a Bruker APEX II spectrometer (Bremen, Germany). The V-650 spectrophotometer from Jasco (Tokyo, Japan) was utilized to measure the UV data. For measuring infrared data, the Jasco FT/IR-4X spectrophotometer was selected. Circular dichroism data were recorded using a Jasco J-815 CD spectrometer. A Jasco P-2000 polarimeter was used to quantify specific optical rotation. Merck KGaA (Darmstadt, Germany) silica gel 60 (0.015–0.040 mm) was utilized to pack columns. For high-performance liquid chromatography (HPLC), Phenomenex (Torrance, CA, USA) C18, phenyl-hexyl, and biphenyl columns were utilized. The LC-40D solvent delivery module, DGU-405 de-gassing unit, CBM-40 system controller, CTO-40S column oven, SPD-M40 photo diode array detector, and FRC-10A fraction collector made up the Shimadzu (Kyoto, Japan) HPLC apparatus.
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10

Purification of Betanin from Beetroot Juice

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Concentrated beetroot juice was purified by RP-HPLC. The HPLC apparatus consisted in an LC-20A Prominence, (Shimadzu®, Kyoto, Japan) equipped with a quaternary pump and a DAD model SPD-M20A (Shimadzu®, Kyoto, Japan). A 15 µm Phenomenex C18 column (250 × 21.2 mm I.D., Torrance, California, USA) connected to an FRC-10A fraction collector (Shimadzu®) was used in the semi-preparative HPLC. The elution conditions were performed according to Cai et al. [39 (link)] with modifications. Solvent A was 1% formic acid, and solvent B was 80% methanol at a linear gradient (0–25 min, 11–55%). The injection volume was 100 μL and a flow rate of 5.5 mLmin−1 was used. Separations were monitored at 536 nm and, after purification, magenta fractions, containing betanin, were concentrated by a rotary evaporator (Rotavapor® R-215, Buchi, São Paulo, Brazil) at 24 °C, 150 rpm and a water bath at 40 °C. The extracts were then suspended in 1 mL deionized water and stored at −30 °C under an N2 atmosphere for further analysis. The purified betanin was analyzed using a Nucleosil 100-C18 column (250 × 4.6 mm I.D., 5 μm) with 30 µL injection volume and a flow rate of 1.0 mL min−1. The mobile phase and gradient conditions were similar to the purification step and betanin concentrations were quantified in comparison to a betanin standard solution (Sigma-Aldrich Co.).
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