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24 protocols using clone 1a4

1

Multicolor Immunofluorescence Staining of Arterial Tissue

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Arterial tissue sections (S3 Fig.) were incubated overnight at 4°C with rat anti-mouse CD18 (1:50, clone C71/16, Cedarlane), Cy3-conjugated mouse-anti human α-actin (1:15000, clone 1A4, Sigma-Aldrich), goat anti-mouse/human ApoB (1:100, R&D systems), and rabbit anti-Ki67 (1:100, clone SP6, GeneTex). The sections were washed and incubated with F(ab)2 AF594-conjugated monovalent donkey anti-goat (1:200, Jackson ImmunoResearch,) and biotinylated donkey anti-rabbit (1:200, Jackson ImmunoResearch) at room temperature for 45 min, followed by Atto425-conjugated streptavidin (1:200, ATTO-TEC) and AF488-conjugated goat anti-mouse CD31 (1:150, R&D systems) at room temperature for 45 min. Nuclei were stained with DAPI (2 μg/ml for 4 min) and the slides were mounted with ProlongGold mounting media (Life Technologies).
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2

Quantifying Cerebral Pial Artery Proteins

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Protein extracts were prepared from cerebral pial arteries and subjected to immunoblotting using rabbit monoclonal anti–TIMP-3 (1:2,500, clone D74B10; Cell Signaling Technology, Danvers, MA), and mouse monoclonal anti–smooth muscle alpha actin (1:25,000, clone 1A4, Sigma-Aldrich) as previously described.6 (link) Densitometric quantification of band intensity was performed using ImageJ (v10.2, NIH).
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3

Quantification of PCNA Immunolabeling

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Paraffin sections of 3-μm thickness were stained with antibodies to α smooth muscle actin (α-SMA) (dilution 1:900, clone 1A4, Sigma, St. Louis, MO, USA), von Willebrand factor (vWF) (dilution 1:900, Dako, Hamburg, Germany) and proliferating cell nuclear antigen (PCNA) (dilution 1:200, sc-56, Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). Automated quantification of PCNA immunopositive labeling was performed using QuPath [29 (link)]. The software was trained to recognize PCNA-stained nuclei and positive-labeled cells using positive cell and subcellular detection modules. The number of cells with PCNA-positively labeling per μm2 and the percentage of cells detected with PCNA immunolabeling were recorded and compared between all groups.
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4

Immunohistochemical Antibody Validation Protocol

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Primary antibodies used for the studies included: (1) A mouse monoclonal antibody to α‐smooth muscle actin (Durand‐Arczynska et al., 1993 (link)) (clone 1A4, catalog number: A5228, Sigma‐Aldrich), (2) A mouse monoclonal antibody to actin (Lessard, 1988 (link)) (clone C4, catalog number: MA1501, Sigma‐Aldrich), (3) Goat polyclonal antibodies to neprilysin (Sagare et al., 2013 (link)) (catalog number: AF1126) and nephrin (Wong et al., 2018 (link)) (catalog number: AF3159), all from R&D Systems (Minneapolis, MN), and (4) A mouse monoclonal antibody to NPRC (clone OTI4H1, catalog number: TA501044, Origene Technologies). Secondary antibodies used for the studies included: (1) A mouse anti‐goat polyclonal antibody (catalog number: sc‐2354, Santa Cruz Biotechnology), and (2) An anti‐mouse polyclonal antibody (catalog number: 7076, Cell Signaling Technology). Additional materials included: ANP(4‐23) (GenScript), human ANP, human CNP and PF04449743 (Sigma‐Aldrich), AP‐811 (Tocris Bioscience), and LBQ657 and tadalafil (Cayman Chemical).
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5

Vascular Morphometric Analysis in Mouse Lungs

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Vascular morphometric analysis in mouse lung sections was performed according to our previously described method.19 (link) Degree of vessel muscularization was assessed by two color IHF staining of lung sections with an anti-αSMA antibody (dilution 1:400, clone 1A4, Sigma-Aldrich Corp., St. Louis, MO, USA) and with an antibody targeting human von Willebrand factor (dilution 1:100, Abcam, Cambridge, MA, USA). IHF-labeled lung sections were scanned with Aperio ScanScope FL at 20 × magnification. To assess the degree of muscularization, vessels (20–100 µm in diameter) were categorized as partially muscularized (< 75% of the vessel circumference immunopositive for anti-αSMA antibody) or fully muscularized (> 75% of the vessel wall immunoreactive against anti-αSMA antibody) as previously described.17 (link) Vessel wall thickness was assessed in vessels immunopositive for αSMA (20–100 µm in diameter; n = 80–100 vessels) for each animal (n = 4/group). Vessel wall thickness was measured using Aperio ImageScope software and calculated using the following equation: Wall thickness = Wall width/Vessel width.
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6

Immunofluorescent Staining of Capillary-like Structures

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Prior to immunofluorescent stainings, the hydrogel constructs were
permeabilized with 0.2% triton-X in PBS for 30 min and blocked in 5% BSA/PBS for
30 min. Capillarylike structures in the hydrogels were investigated by CD31
staining (5.1 μg mL−1, M0823, Dako), secondary sheep antimouse
biotinylated antibody (1:200, RPN1001v1, GE Healthcare), and tertiary
streptavidin Alexa Fluor 488 conjugate (5.0 μg mL−1, S32354,
Invitrogen). In vasculogenic cocultures, ECFCs with the GFP label were not
stained for CD31. The endothelial phenotype was confirmed by a rabbit
antivascular endothelial cadherin antibody (VE-cad, 1:250, D87F2, Cell
Signalling Technology) which was combined with a secondary donkey-antirabbit
Alexa 647 antibody (5 μg mL−1, ab150075, Abcam). Stabilizing cells of
the capillary-like structures were identified by a mouse monoclonal
Cy3-conjugated aSMA antibody (1:300 μg mL−1, Clone 1A4, C6198 Sigma
Aldrich). Furthermore, 4,6-diamidino-2-phenylindole (DAPI, 100 ng
mL−1, Sigma) was used to stain cell nuclei. The hydrogels were
imaged with a confocal microscope (SP8x Leica, DMi8, Leica).
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7

Immunophenotyping of Vascular Smooth Muscle Cells

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HASMCs were analyzed using monoclonal (Santa Cruz Biotechnology; catalogue number sc‐377218, clone F1) or polyclonal (Santa Cruz Biotechnology; catalogue number sc‐8316, H‐181) antibodies against TrkB or the monoclonal anti–pan‐Trk antibody (Abcam; catalogue number ab181560, clone EPR17341) or monoclonal antibodies against SMA (Sigma Aldrich, clone 1A4) followed by fluorescence‐conjugated secondary antibodies (Alexa Fluor 488, MoBiTec). Cells were washed and analyzed on a FACSCanto I (BD Biosciences). Results are expressed as percent positive cells per 1×106 total cells.
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8

Immunofluorescent Staining of Capillary-like Structures

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Prior to immunofluorescent stainings, the hydrogel constructs were
permeabilized with 0.2% triton-X in PBS for 30 min and blocked in 5% BSA/PBS for
30 min. Capillarylike structures in the hydrogels were investigated by CD31
staining (5.1 μg mL−1, M0823, Dako), secondary sheep antimouse
biotinylated antibody (1:200, RPN1001v1, GE Healthcare), and tertiary
streptavidin Alexa Fluor 488 conjugate (5.0 μg mL−1, S32354,
Invitrogen). In vasculogenic cocultures, ECFCs with the GFP label were not
stained for CD31. The endothelial phenotype was confirmed by a rabbit
antivascular endothelial cadherin antibody (VE-cad, 1:250, D87F2, Cell
Signalling Technology) which was combined with a secondary donkey-antirabbit
Alexa 647 antibody (5 μg mL−1, ab150075, Abcam). Stabilizing cells of
the capillary-like structures were identified by a mouse monoclonal
Cy3-conjugated aSMA antibody (1:300 μg mL−1, Clone 1A4, C6198 Sigma
Aldrich). Furthermore, 4,6-diamidino-2-phenylindole (DAPI, 100 ng
mL−1, Sigma) was used to stain cell nuclei. The hydrogels were
imaged with a confocal microscope (SP8x Leica, DMi8, Leica).
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9

Quantification of Pulmonary Vessel Muscularization

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To quantify the degree of pulmonary vessel muscularization, 3 µm sections of paraffin-embedded lungs were stained with antibodies against α-smooth muscle actin (1:700 dilution; clone 1A4, Sigma-Aldrich, Munich, Germany, Cat# A2547, RRID:AB_476701, antibody validated by manufacturer ) and von Willebrand-factor (1:2000 dilution; Dako, Glastrup, Denmark, Agilent Cat# A0082, RRID:AB_2315602, antibody validated by manufacturer) as described previously (Dumitrascu et al., 2006 (link)). Pulmonary vessels with a diameter of 20–70 µm were analyzed from each lung using the Leica Qwin Software (Leica, Wetzlar, Germany). Lung sections were analyzed by meandering the slides at a magnification of × 400 and including every second row into the calculation (at least 100 vessels). Quantification was done by determining the percentage of α-smooth muscle actin-positive areas of the tunica media of all counted vessels for every mouse and group (≙ mean muscularization).
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10

Quantifying Collateral Vessel Diameter and Macrophages

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The collateral vessel was carefully removed to retain structural integrity in order to evaluate vessel diameter. Adipose tissue surrounding the collateral vessel was also harvested during the removal process and was used for macrophage quantification. Harvested collateral vessels and surrounding adipose tissue samples were stained concurrently with α-smooth muscle actin Cy3 (1:200, Clone 1A4, Sigma, St. Louis, MO) and Alexa Fluor 647 anti-mouse CD68 (1:200, Clone FA-11, AbD Serotec, Raleigh, NC) as described previously43 (link). Four unique FOVs were acquired for each sample as 40 µm z-stacks and the number of CD68+ cells were quantified using ImageJ. Data presented include vessel diameter measurements of the feeding collateral vessel, the first branch of the collateral vessel, and the second branch of the collateral vessel.
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