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14 protocols using pe mouse igg1 isotype control

1

Detecting Rat Lung T-Cell Responses

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Lungs were minced and incubated in RPMI-1640 (Gibco, Grand Island, NY, USA) with 2 mg ml−1 collagenase D for 30 min in 37 °C. After digestion, the lung cells were dispersed by gentle pipetting, followed by filtration through a 75 μm cell strainer. Then, 20 ng ml−1 of phorbol 12-myristate 13-acetate and 1 μg ml−1 of ionomycin (Sigma-Aldrich) were added to the cells. The cells were incubated at 37 °C in 5% CO2 for 1 hour and then supplemented with 10 μg ml−1 Brefeldin A (Sigma-Aldrich, Shanghai, CN) and incubated for another 4 hours. The cells were resuspended in 100 μl of staining buffer containing FITC-labeled mouse anti-rat CD3 and PerCP mouse anti-rat CD8a (BD Pharmingen) antibodies, and they were incubated for 30 minutes at 4 °C, fixed and permeabilized by addition of 500 μl of fixation/permeabilization solution (BD Pharmingen), vortexed and then incubated at RT in the dark for another 20 minutes. Subsequently, the cells were resuspended in 100 μl of Perm/Wash buffer containing PE mouse anti-rat IL-4 and Alexa Fluor® 647 mouse anti-rat IFN-γ antibodies and stained for 30 minutes at 4 °C. Mouse IgG1 PE isotype control (BD Pharmingen) and mouse IgG1 Alexa Fluor® 647 isotype control (BD Pharmingen) were used as negative controls. All samples were washed, resuspended in 2% paraformaldehyde and analyzed by flow cytometry (Accuri C6, BD Accuri).
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2

Phagocytosis of Tumor Cells by DCs

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Tumor cells were divided into four groups including untreated control, indicated compounds, RT (6 Gy), and the combination treatment group. After treatment for 24 hours, ESCC cells were collected, washed three times and stained with CFSE (Abcam). Then, they were washed and cocultured with immature DCs for 2 hours at ratio of 1:1. At the end of incubation, the cells were stained with mouse anti-human CD11c-phycoerythrin (PE) (BD Biosciences) or mouse IgG1-PE isotype control (BD Biosciences) for half an hour at 37°C. Phagocytosis was estimated by the Flow Cytometer (BD Biosciences). The population of double positive cells (CFSE and CD11c-PE stained cells) was calculated to obtain phagocytotic efficiency.
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3

NK Cell Cytotoxicity Assay with NKTR-255 or rhIL-15

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Briefly, NK cells previously stimulated with NKTR-255 or rhIL-15 were collected and cultured for 4 hours alone or with CTV-stained MM cells at a T:E ratio of 1:1 in a 96-well U-bottom plate with 200 μL/well of culture medium without cytokines and 5 μL/well of anti-CD107a-PE (BD Biosciences, Cat.#555801) or mouse IgG1-PE isotype control (BD Biosciences, Cat.#555749). After 1 hour of incubation at 37°C, 5 μL/well of a monensin solution produced by mixing 2 μL of GolgiStop (BD Biosciences, Cat.#BDB554724) and 75 μL of culture medium was added. Following the 4 hours of incubation, cells were washed and stained in FACS buffer with anti-CD3-PerCP/Cy5.5 (Biolegend, Cat.#317336) and anti-CD56-BV786 (BD Biosciences, Cat.#564058), followed by flow cytometry evaluation as mentioned above.
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4

Anticoagulants for Platelet Activation

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The following anticoagulants were used for blood collection: sodium citrate (Becton-Dickinson, Franklin Lakes, NJ, USA), hirudin (Schering AG, Berlin, Germany), heparin (WZF Polfa S.A., Warsaw, Poland), and EDTA (Sarstedt, Warsaw, Poland). Antibodies against CD61, against CD62P and PAC-1 antibodies, mouse IgG1/PE isotype control, and isotype controls were from Becton Dickinson (Erembodegem, Belgium). Phosphate buffered saline (PBS) was obtained from Corning (New York, NY, USA). All material used for measurements and all other chemicals were obtained from Sigma (St. Louis, MO, USA), unless otherwise stated. Water intended to be used for the experiments (solution preparation, glassware washing) was previously purified using Easy Pure UF unit (Thermolyne Barnstead, Dubuque, IO, USA).
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5

Quantifying Platelet Activation: Biochemical and Biophysical Analyses

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PSB 0777 (ammonium salt) was purchased from Tocris Bioscience (Bristol, United Kingdom) and cangrelor (sodium salt, AR-C69931MX) was from Cayman Chemical (Ann Arbor, MI, United States). Human serum albumin (HSA, purity 96–99%), warfarin sodium salt, ibuprofen sodium salt, and adenosine 5′-diphosphate (ADP, purity ≥95%), prostaglandin E1 (PGE1) were obtained from Sigma (St. Louis, MO, United States). Monoclonal antibodies anti-human CD61/PerCP (Cat# 347408, RRID: AB_2811174), CD62/PE (Cat# 348107, RRID: AB_2184974), mouse IgG1/PE isotype control (Cat# 340013, RRID: AB_399997) and Cellfix were obtained from Becton Dickinson (San Diego, CA, United States). Biacore sensor chips (CM5), Biacore amine coupling kit and BIAmaintenance kit were from GE Healthcare (Little Chalfont, United Kingdom). The BCA Protein Assay Kit was purchased from Thermo Scientific (Waltham, MA, United States). Phosphate buffered saline (PBS) was obtained from Biomed-Lublin (Lublin, Poland). All other chemicals, unless otherwise stated, were purchased from Avantor Performance Materials (Gliwice, Poland). All reagents were of analytical grade. Water used for solution preparation and glassware washing was passed through an Easy Pure UF water purification system (Thermolyne Barnstead, IA, United States).
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6

Platelet Function Assays Using Inhibitors

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Cangrelor (sodium salt, AR-C69931MX) was purchased from Cayman Chemical (Ann Arbor, MI, USA). Prasugrel metabolite (R-138727) was obtained from BOC Sciences (Shirley, NY, USA). PSB 0739 (sodium salt), MRS 2279 (diammonium salt) and MRS 2179 (tetrasodium salt) were obtained from Tocris Bioscience (Bristol, UK). Monoclonal antibodies anti-human CD61/PerCP (Cat# 347408, RRID: AB_2811174), CD62P/PE (Cat# 348107, RRID: AB_2184974), mouse IgG1/PE isotype control (Cat# 340013, RRID: AB_399997), Cellfix, blood collection tubes containing 3.2% buffered sodium citrate solution were purchased from Becton-Dickinson (Franklin Lakes, NJ, USA). Adenosine 5 ′ -diphosphate (ADP, purity ≥95%) was purchased from Sigma (St. Louis, MO, USA). All other chemicals, unless otherwise stated, were purchased from Avantor Performance Materials (Gliwice, Poland). Water used for solution preparation and glassware washing was passed through an Easy Pure UF water purification system (Barnstead Thermolyne, Dubuque, IA, USA).
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7

Multiparameter Immunophenotyping of Immune Cells

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PerCp-Cy5.5 anti-CD161, PE anti-RORγt, PE anti–γδ TCR, biotinylated anti–γδ TCR, PerCp-Cy5.5 anti-CD45RA, and APC anti–αβ TCR antibodies were from eBioscience. A647 anti-PLZF, APC-Cy7 anti-CD4, PE-Cy7 anti-CD8, BV421 anti-CD3, BV421 anti-CD161, PE anti-STAT4 (pY693), PE anti–IL-6R, PE anti–IL-12Rβ1, PE anti–IL-21R, PE mouse IgG1 isotype control, PerCP-Cy5.5 anti-STAT3 (pY705), and FITC anti–Vδ2 TCR antibodies were from BD. FITC anti–Vα24 TCR and PE and biotinylated anti-Vβ11 antibodies were from Beckman Coulter. FITC anti–Vδ1 TCR was from Thermo Fisher Scientific. APC or APC-Cy7 anti-Vα7.2 and PE-Cy7 anti–αβ TCR antibodies were from BioLegend. FITC anti-CCR7 antibody was from R&D Systems. MR1–5-OP-RU tetramers have been described previously (Reantragoon et al., 2013 (link); Corbett et al., 2014 (link)).
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8

Multicolor Immunofluorescence Staining Protocol

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Chicken anti-GFP antibody (Abcam, ab13970, 1:500), Rabbit anti-Prospc (Millipore, ab3786, 1:500), Rat anti-Ki67 (ebioscience, 14-5698-82, 1:200), Rat anti-F4/80 (BioRad, MCA497GA, 1:200), APC anti-mouse CD326 (BioLegend, catalog#118214), PE/Cyanine7 anti-mouse CD45 (BioLegend, catalog#103114), PE/Cyanine7 anti-mouse CD31 (BioLegend, catalog#102418), PE anti-mouse F4/80 (BioLegend, catalog#123110), APC anti-mouse CD11c (BioLegend, catalog#117310), PerCP-Cyanine5.5 anti-human/mouse CD11b (Tonbo, catalog#65-0112), PE anti-mouse FOXP3 (BD biosciences, catalog#560408), APC anti-mouse CD4 (BD biosciences, catalog#553051), FITC Mouse IgG1 isotype control (BD biosciences, catalog#555748), PE Mouse IgG1 isotype control (BD biosciences, catalog#555749), APC Mouse IgG1 isotype control (BD biosciences, catalog#555751), FITC anti-human CD90 (BD biosciences, catalog#555595), PE anti-human CD73 (BD biosciences, catalog#550257), APC anti-human CD105 (BD biosciences, catalog#562408), FITC anti-human CD45 (BD biosciences, catalog#555482), PE anti-human CD34 (BD biosciences, 550761), Alexa Fluor 488 Donkey anti Chicken (Jackson Immuno Research, catalog#703-545-155), Alexa Fluor Cy3 Donkey anti Rat (Jackson Immuno Research, catalog#712-165-153), and Alexa Fluor 488 Donkey anti Rabbit (Jackson Immuno Research, catalog#711-545-152).
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9

Platelet activation and apoptosis assay

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Thrombin 6 receptor activating peptide (TRAP-6), collagen, and phorbol myristate acetate (PMA), were obtained from Sigma-Aldrich (St. Louis, MO, USA). Antimycin (AA), citrate-dextrose solution, mepacrine, dihydroethidium (DHE), intracellular calcium fluorescence indicator (Fluo-3-AM), and trifluoromethoxyphenylhydrazone (FCCP) were also obtained from Sigma-Aldrich (St. Louis, MO, USA). FITC annexin V apoptosis, PE mouse IgG1 isotype control, and FITC mouse anti-human CD61 were obtained from BD Biosciences (San Diego, CA, USA). Isorhamnetin was obtained from Cayman Chemical, USA. All assays incorporated as vehicle control dimethyl sulfoxide (DMSO) 0.2%.
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10

CXCR3 Expression Analysis by Flow Cytometry

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Cells were washed three times with phosphate-buffered saline (PBS), 5% BSA and labeled in suspension with R-phycoerythrin (PE) mouse anti-human CD183 (ref: 557185BD, BD Pharmingen) or PE Mouse IgG1, Isotype Control (ref: 555749, BD Pharmingen) for 20 min at 4 °C. Cells were then washed three times with PBS, 5% BSA and analyzed on an AccuriC6 flow cytometer with BD AccuriC6 software (BD, San Jose, CA) as recommended to the manufacturer’s instruction. A minimum of 10,000 events was recorded per sample.
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