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28 protocols using anti mfn2

1

Immunoblotting and Immunofluorescence Antibody Dilutions

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Antibodies used for immunoblotting and their corresponding dilutions were anti-MAVS (Santa Cruz Biotech sc-365334; 1:500), anti-TOM20 (Santa Cruz Biotech sc-11415; 1:300), anti-alpha Sr-1 (Abcam ab28052; 1:1,500), anti-β-actin (Santa Cruz Biotech sc-1615-hrp, 1:2,000), anti-MFN2 (Cell Signaling #9482; 1:800), anti-TBK1 (Cell Signaling #3504; 1:1,000), anti-phospho-TBK1 (Ser172) (Cell Signaling #5483; 1:700), goat anti-rabbit IgG-HRP (Millipore #12-348; 1:2000), and goat anti-mouse IgG-HRP (Millipore #12-349; 1:2,000). Primary antibodies used for immunofluorescence were anti-MAVS (Santa Cruz Biotech sc-365334; 1:100 dilution), anti-TOM20 (Abcam ab56783; 1:100 dilution), anti-FACL4 (Thermo PA5-27137; 1:50), anti-PMP70 (Abcam ab3424; 1:650), anti-MFN2 (Cell Signaling #9482; 1:50), anti-TRAF3 (Santa Cruz Biotech sc-1828or Thermo Fisher Scientific PA1-41107; 1:50), anti-alpha Sr-1 (Abcam ab28052; 1:50), anti-vimentin (Thermo Fisher Scientific PA1-16759; 1:2,000), anti-GM130 (BD Biosciences #610822; 1:250), anti-reovirus σ1 5C6 and G5 ((95 (link)); mix of 1:2,500 each; Fig. 6B), and rabbit anti-reovirus T3D antisera (B. Sherry, unpublished; 1:2,000; Fig S5). Secondary antibodies were Alexa® 488-, Alexa® 594- or Alexa® 647-conjugated goat anti-mouse, anti-rabbit or anti-chicken IgG (Thermo Fisher Scientific; 1:750 - 1:1,000).
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2

Protein Detection Reagents for Western Blotting and Immunofluorescence

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Detecting reagents used for western blotting include: streptavidin-HRP (Cell Signaling, 3999S, 1:3000), anti-Myc (Cell Signaling, 2276S, 1:3000), anti-V5 (Abcam, ab27671, 1:3000), anti-β actin (GenScript, A00702, 1:3,000), anti-FLAG (GNI, GNI14110-FG, 1:3000), anti-ABCD3 (Sigma, P0497, 1:3000), anti-MFN1 (Cell Signaling, D6E2S, 1:3000), anti-MFN2 (Cell Signaling, D1E9, 1:3000). Antibodies used for immunofluorescence include: anti-MFN1 (Cell Signaling, D6E2S, 1:500), anti-MFN2 (Cell Signaling, D1E9, 1:500), anti-calnexin (Abcam, ab22595, 1:500), anti-EEA1 (Cell Signaling, C45B10, 1:500), anti-GM130 (Abcam, ab52649, 1:500), anti-LAMP1 (Cell Signaling, D2D11, 1:500), anti-ABCD3 (Sigma, SAB4200181, 1:500), anti-ABCD3 (Sigma, P0497, 1:500), anti-catalase (Merck/Millipore, 219010, 1:500), anti-FLAG (GNI, GNI14110-FG, 1:500), anti-FLAG (Proteintech, 20543-1-AP, 1:500), anti-Myc (Cell Signaling, 2276S, 1:500), anti-COX4 (Proteintech, 11242-1-AP, 1:500).
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3

Protein Expression Analysis in Cells

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Total proteins were extracted from cells or tissues using RIPA Lysis Buffer. Protein concentration was measured by BCA Protein Assay Kit. To examine the expression of proteins, the same amount of total proteins was loaded on an 8-12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel. Proteins were transferred into PVDF membranes. After being blocked in skim milk solution, the membrane was incubated overnight separately with antibodies anti-β-actin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-PI3K, anti-p-Akt, anti-p-Bad, anti-Cyt-c, anti-cleaved caspase 9, anti-cleaved caspase 3, anti-PARP, anti-DRP1, and anti-Mfn2 (Cell Signal, CST, USA). After that, the membrane was incubated with the secondary HRP-conjugated goat anti-rabbit antibodies (Santa Cruz Biotechnology). Proteins were visualized using an enhanced chemiluminescence kit from Thermo Fisher Scientific (Massachusetts, USA). ImageJ software (Alpha View SA) was used to perform densitometric analysis.
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4

Western Blot Analysis of Cardiac Proteins

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Cardiac tissue samples were divided into non‐ischaemic (remote) and ischaemic areas and added to lysis buffer. Protein concentration was determined using a Bio‐Rad protein assay kit (Bio‐Rad Laboratories), the proteins being added to the loading buffer.19 The proteins were then transferred to nitrocellulose membranes with transfer buffer. Skimmed milk (5% solution) was used to block the membranes for 1 hour at room temperature. The nitrocellulose membranes were exposed overnight to anti‐LDLR, anti‐PCSK9, anti‐Bax, anti‐Bcl2, anti‐caspase 3, anti‐connexin43 (Cx43), anti‐connexin43 phosphorylated at Ser368, anti‐Drp1, anti‐Mfn2 and anti‐VDAC (Cell Signalling technology, Danvers, MA, USA). Subsequently, the membranes were washed and incubated with horseradish peroxidase conjugated with anti‐rabbit IgG (Cell Signaling Technology). Finally, the bands were detected and were used to determine protein expression.19
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5

Mitochondrial Dynamics and DNA Damage Markers

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The following primary antibodies were used for western blotting: anti-MFN1 (1:1000, Cell Signaling Technology, 14739S), anti-MFN2 (1:1000, Cell Signaling Technology, 9482S), anti-OPA1 (1:1000, Cell Signaling Technology, 80471S), anti-DRP1 (1:1000, Cell Signaling Technology, 8570S), anti-DRP1 p-S616 (1:1000, Cell Signaling Technology, 3455S), anti-FIS1 (1:1000, Abcam, ab156865), anti-H2A.X p-S139 (1:1000, Cell Signaling Technology 2577S), anti-VDAC (1:1000, Cell Signaling Technology, 4661S), anti-β-tubulin (1:1000, Cell Signaling Technology, 2146S) and horseradish peroxidase-conjugated anti-rabbit IgG H&L (1:10,000, Abcam, ab205718).
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6

Mitochondrial Dynamics and Apoptosis Regulation

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The 20 μg aliquots of cytoplasmic and mitochondrial fractions were mixed with SDS-loading buffer and boiled at 95 °C for 3–5 min. Equal amounts of proteins were loaded and electrophoretically separated using SDS-PAGE (Pulilai Co, Beijing, China). The separated proteins were transferred to nitrocellulose membranes and the membranes then incubated at 4 °C overnight with the following primary antibodies: anti-PINK1 (1:1000, ab23707, Abcam, Boston, MA, USA), anti-parkin (1:1000, ab77924, Abcam), anti-LC3B (1:1000, #3868, Cell Signaling Technology, Danvers, MA, USA), anti-P62 (1:1000, #39749, Cell Signaling Technology), anti-Tomm20 (1:1000, #42406, Cell Signaling Technology), anti-COX IV (1:1000, ab33985, Abcam), anti-Drp1 (1:1000, #5391, Cell Signaling Technology) anti-Mfn2 (1:1000, #9482, Cell Signaling Technology), anti-OPA1 (1:1000, #80471, Cell Signaling Technology), anti-cleaved caspase-3 (1:1000, #9661, Cell Signaling Technology) or anti-β-actin (1:5000, ab8226, Abcam). The membranes were then incubated with the appropriate secondary antibodies for 1 h at room temperature. The protein bands were visualized using enhanced chemiluminescence (Amersham Bioscience, Uppsala, Sweden) and quantified using Image J software (NIH).
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7

Neuronal cell culture and analysis

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Hank's balanced salt solution (HBSS), Horse serum (HS), Minimum Essential medium (MEM), Neurobasal medium, Fetal bovine serum (FBS), L-glutamine (L-Gln), Penicillin-streptomycin, Antibiotic-antimycotic (AA), B27 supplement, Alex Fluor 488-conjuated IgG, Alex Fluor 555-conjuated IgG, DAPI, Prolong Gold, JC-1, Alexa Fluor® 488 Annexin V/Dead Cell Apoptosis Kit, TrypLE™ Express, MitoSOX™ Red and Power SYBR® Green PCR Master Mix were purchased from Life technologies (Carlsbad, CA). Cysteine, CaCl2, Papain, DNase I, Poly-L-lysine, Glutamate, Cytosine-1-β-D-arabinofuranoside (AraC), MTT powder and Bovine serum albumin (BSA) were purchased from Sigma (Saint Louis, MO). Anti-Tom 20 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-Drp1, anti-Mfn2 and anti-PSD95 were purchased from Cell signaling (Boston, MA). Anti-NDUFS8 was purchased from GeneTex (Irvine, CA). Wizard® Genomic DNA Purification Kit was purchased from Promega (Madison, WI). Triton X-100 was purchased from USB (Cleveland, Ohio). Anti-Tuj1 was purchased from Covance. Anti-SDHA, Anti-CORE2 and Anti-COX1 were purchased from Abcam. IRDye-conjugated secondary antibody was purchased from LI-COR Biosciences (Lincoln, NE). Rabbit polyclonal anti-pDrp1(S637) antibody was developed using phosphopeptide (Cys-Pro-Val-Ala-Arg-Lys-Leu-pSer637-Ala-Arg-Glu-Gln-Arg-Asp) of Drp1.
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8

Antibody Characterization for Cell Biology

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Anti-Tim23 (1/1,000), anti-Tom20 (for western blots, 1/1,000, for immunofluorescence, 1/200), anti-Bcl2-L-13 (1/1,000) (Proteintech), anti-cytochrome c (1/1,000) (BD biosciences), anti-Bcl2-L-13 (1/500), anti-GAPDH (1/1,000), anti-Fis1 (1/1,000), anti-α-tubulin (1/1,000) (Abcam), anti-LC3B (for western blots, 1/1,000, for immunofluorescence, 1/100), anti-HA (for western blots, 1/1,000, for immunofluorescence, 1/200), anti-Drp1Ser637 (1/500), anti-Drp1Ser616 (1/1,000), anti-Mfn2 (1/1,000), anti-cleaved caspase 3 (1/1,000) (Cell Signaling Technology), anti-ATP synthase subunit beta (for western blots, 1/1,000, for immunofluorescence, 1/200) (Life Technologies), anti-Drp1 (for western blots, 1/1,000, for immunofluorescence, 1/100), anti-Opa1 (1/1,000) (BD Transduction Laboratories), anti-FLAG (for immunofluorescence, 1/200) (Sigma), anti-Mfn1 (1/1,000) (Abnova), anti-ubiquitin (for immunofluorescence, 1/200) (Enzo Life Science), anti-Phospho-Serine/Threonine (Upstate), anti-mCherry (1/500) (Clontech) and anti-RFP23 (link) (1/1,000) antibodies were used in this study.
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9

Western Blot Analysis of Mitochondrial Proteins

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Proteins from HUVECs were extracted with RIPA lysis buffer (Beyotime, Shanghai, China) containing 1% PMSF (Beyotime, Shanghai, China) and quantified using a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (30 μg) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to 0.22-μm PVDF membranes (Millipore, Billerica, MA, USA), and incubated overnight at 4 °C with specific antibodies: anti-p16, anti-p21, anti-FIS1, anti-SAHH (Abcam, Cambridge, UK), anti-p53, anti-Drp1, anti-OPA1, anti-MFN1, anti-MFN2, anti-DNMT1, anti-DNMT3A, anti-DNMT3B, and anti-GAPDH (Cell Signaling Technology, Danvers, MA) followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology, Danvers, MA). The dilution ratio was 1:1000 for the primary antibodies and 1:10,000 for the secondary antibodies. Protein bands were visualized with Super Signal Chemiluminescence Substrate (Thermo Scientific, Waltham, MA, USA) and GAPDH was used as a control. Images were captured using the FluorChem E system (Protein Simple, Minneapolis, MN, USA) and band densities were quantified using image J software (NIH, Bethesda, MD, USA). The densities of the bands were normalized to that of GAPDH.
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10

Mitochondrial Dynamics and Apoptosis Regulation

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Anti-Tim23 (1/1000), anti-Tom20 (for western blots, 1/1000, for immunofluorescence, 1/200), anti-Bcl2-L-13 (1/1000) (Proteintech), anti-cytochrome c (1/1000) (BD biosciences), anti-Bcl2-L-13 (1/500), anti-GAPDH (1/1000), anti-Fis1 (1/1000), anti-α-tubulin (1/1000) (Abcam), anti-LC3B (for western blots, 1/1000, for immunofluorescence, 1/100), anti-HA (for western blots, 1/1000, for immunofluorescence, 1/200), anti-Drp1Ser637 (1/500), anti-Drp1Ser616 (1/1000), anti-Mfn2 (1/1000), anti-cleaved caspase 3 (1/1000) (Cell Signalling Technology), anti-ATP synthase subunit beta (for western blots, 1/1000, for immunofluorescence, 1/200) (Life Technologies), anti-Drp1 (for western blots, 1/1000, for immunofluorescence, 1/100), anti-Opa1 (1/1000) (BD Transduction Laboratories), anti-FLAG (for immunofluorescence, 1/200) (Sigma), anti-Mfn1 (1/1000) (Abnova), anti-ubiquitin (for immunofluorescence, 1/200) (Enzo Life Science), anti-Phospho-Serine/Threonine (Upstate), anti-mCherry (1/500) (Clontech) and anti-RFP23 (link) (1/1000) antibodies were used in this study.
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