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5 protocols using c abl

1

Cell Signaling Pathway Profiling

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All cell culture reagents were purchased from Gibco-Invitrogen (Carlsbard, CA, USA). Cell culture dishes and other plasticware were obtained from Nalgene Nunc (Rochester, NY, USA). Salts and buffers were purchased Sigma (St. Louis, MO, USA). Leptomycin B (LMB), α-tocopherol, LPS O111:B4 and (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) tetrazolium (MTT) were obtained from Sigma-Aldrich. Primary antibodies used in protein detection of CALM, α-adaptin, β-adaptin, eps 15, c-Myc, c-Jun, c-Abl and SR-B1 as well as secondary antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA, USA) and Abcam (Cambridge, UK). Fluorescent conjugates of LPS BODIPY FL, and 6-carboxy-2′,7′-dichlorodihydrofluorescein diacetate for ROS detection were obtained from Thermo Fisher Scientific (Waltham, MA, USA).
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2

Signaling Pathway Profiling in Hematological Malignancies

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Antibodies against Bcr, p-Akt/Akt, PI3K p110β, Stat5, Erk1/2, p-Erk1/2,Bcl-xL, PARP and PathScan® Bcr/Abl Activity Assay (Phospho-c-Abl, Phospho-Stat5 and Phospho-CrkL Multiplex Western Detection Cocktail) were from Cell Signaling Technology (Andover, MA, USA). Antibodies against GAPDH, β-actin and c-Abl were from Santa Cruz Biotechnology (Santa Cruz Biotechnology, CA, USA), Antibodies against FLAG or HA were from Sigma-Aldrich (St Louis, MO, USA). Secondary antibodies were chosen according to the primary antibodies origin. Proteasome inhibitor MG132 was from Calbiochem (Billerica, MA, USA). Imatinib mesylate was from Department of Hematology, Tangdu hospital, the Fourth Military Medical University. SYBR Premix Ex Taq II and Multiscript RT were purchased from TaKaRa Biotechnology (Dalian) Co., Ltd (Dalian, China).
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Western Blot Analysis of Signaling Proteins

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Total cellular proteins were isolated with lysis buffer. Equal amounts of protein were subjected to SDS-PAGE and transferred to nitrocellulose membranes. The membranes were blocked and then incubated with p-AurA (Thr288), p-ABL (Tyr245), p53 and p21(Cell Signaling Technology), AurA (Upstate, NewYork, USA), c-ABL and GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA, USA) antibodies. Subsequently, the membranes were incubated with an HRP-conjugated secondary antibody (Cell Signaling Technology) at room temperature for 1 h and were visualized using enhanced chemiluminescence reagents (Sigma), according to the manufacturer’s instruction.
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4

Protein Expression Detection Assay

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The following antibodies were used to detect protein expression: c-Abl (Cell signaling), ALK (Cell signaling), Raf-B (Santa Cruz), MET (Cell signaling), TrkB (abcam), Phospho-Stat1 (Y701; Cell signaling), Stat1 (Cell signaling), Phospho-Stat3 (Y705; Cell signaling), Phospho-AKT (S473 & T308; Cell signaling), Phospho-ERK1/2 (T202/Y204; Cell signaling), ERK1/2 (Cell signaling), Vinculin (Cell signaling), and GAPDH (Santa Cruz).
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5

Western Blot Analysis of Cell Signaling

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Cells or brain tissues were lysed in 300 μl of lysis buffer [150 mM sodium chloride, 1% Triton X-100, 1% sodium deoxycholate, 0.1% sodium dodecyl sulphate (SDS), 50 mM Tris-HCl (pH 7.5), 2 mM EDTA] containing mixture of HaltTM protease and phosphatase inhibitors (1×) (Thermo Fisher Scientific). The brain tissues were individually homogenized and then centrifuged at 13,400×g at 4°C for 15 min. Protein concentration was determined using the Pierce BCA protein assay kit (Thermo Fisher Scientific). Bovine serum albumin was used as the standard. Proteins (20–30 μg) for each sample were separated using 12% sodium dodecyl sulfate-PAGE and transferred to polyvinylidene fluoride filter membranes (Bio-Rad) by the semi-dry electroblotting method. The membranes were blocked with 5% skim milk and incubated sequentially with the following primary antibodies against either c-Abl (rabbit monoclonal antibody, 1:1000; Santa Cruz), p-p65, p-65, p-IκB, IκB (rabbit monoclonal antibody, 1:1000; Cell Signaling), TNF-α (rat anti-mouse monoclonal antibody, 1:500; Millipore) or α-tubulin (mouse monoclonal antibody, 1:2000; Sigma-Aldrich) and horseradish peroxidase-conjugated secondary antibodies (anti-rabbit or mouse IgG antibody; Cell Signaling), followed by chemiluminescence detection (Thermo Fisher Scientific).
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