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2 protocols using si circ ccdc66

1

Circular RNA CCDC66 Knockdown Protocol

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Small interfering (si) RNAs targeting circ-CCDC66 (si-circ-CCDC66#1 and #2), LARP1 siRNA, and corresponding negative controls were synthesized by GenePharma (Shanghai, China). The mimic/inhibitor miR-129-5p and the negative control were also obtained from GenePharma. Short hairpin (sh) RNA targeting circ-CCDC66 (sh-circ-CCDC66) and sh-NC were designed and purchased from Genecopoeia (Guangzhou, China). The lentiviral vector for circ-CCDC66 was purchased from GeneCreate Biological Engineering (Wuhan, China). Cell transfection was performed using Lipofectamine 3000 (Invitrogen) according to the manufacturer’s instructions, and the transfection efficacy was tested at 48 h. The sequence of siRNAs used was: si-circ-CCDC66 #1, sense: 5ʹ-AUUUUCUUUGCAGUUCUUGUU-3ʹ, antisense: 5ʹ-CAAGAACUGCAAAGAAAAUGG-3ʹ; si-circ-CCDC66 #2, sense: 5ʹ-AAUAUAUAAUUUUUUCCUCUA-3ʹ, antisense: 5ʹ-GAGGAAAAAAUUAUAUAUUCA-3ʹ; LARP1 siRNA, sense: 5ʹ-AUAGUUAAAACUUCAGAACAA-3ʹ, antisense: 5ʹ- GUUCUGAAGUUUUAACUAUUA-3ʹ. Transfection ef-ficiency of more than 70% was considered as an effective transfection.
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2

Silencing circCCDC66 in Thyroid Cancer Cells

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The cell lines Nthy-ori 3-1, CAL62 and TPC1 were purchased from the American Type Culture Collection (ATCC). All cells were cultured in DMEM (Invitrogen; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS (Invitrogen; Thermo Fisher Scientific, Inc.) and were places at 37°C in a humidified incubator containing 5% CO2.
Cell transfection was carried out using Lipofectamine® 2000 Reagent (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturers' instruction when cells in culture reached 60–80% confluence. Small interfering (si)RNAs targeting circCCDC66 (si-circCCDC66#1, 5′-CAAUUAGAGCAUCAGGAAA-3′; si-circCCDC66#2, 5′-GAGCAUCAGGAAACAGUAC-3′) and negative control (si-NC, 5′-UUCUCCGAACGUGUCACGUTT-3′) were purchased from Shanghai GenePharma Co., Ltd. miR-211-5p mimic and negative control were purchased from Guangzhou RiboBio Co., Ltd (cat. no. miR10000268-1-5). The transfection concentrations of oligonucleotides were as follows: si-NC, 40 nM; si-circCCDC66, 40 nM; miR-211-5p mimic, 50 nM; and miRNA control, 50 nM. Lipofectamine® 2000 Reagent (Invitrogen; Thermo Fisher Scientific, Inc.) and si-RNAs or miR-mimic were diluted into serum-free DMEM medium, mixed together and incubated for 20 min at room temperature. This solution was subsequently was added to CAL62 and TPC1 cells and transfected for 4–6 h at 37°C in a humidified incubator containing 5% CO2.
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