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7 protocols using anti col4

1

Western Blot Analysis of HBZY-1 Proteins

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Proteins extracted from the HBZY-1 cells were analyzed by Western blotting. Equal amounts of protein (about 50 μg) were subjected to SDS-PAGE and transferred to a PVDF membrane, then blocked in 5% skimmed milk for 2 hours at room temperature, and then incubated overnight at 4°C with the following primary antibodies according to the instructions: anti-BKCa-α, anti-BKCa-β, anti-Col IV, anti-FN, and anti-β-actin (Abcam Biotechnology, USA). The membranes were then incubated with HRP-conjugated secondary anti-mouse antibody (Abcam Biotechnology, USA). Protein bands on the membrane were visualized by ECL (electrochemiluminescence) (ThermoScientific, Rockford, IL, USA) and quantitated using QuantityOne software (Bio-Rad, Richmond, CA, USA). Image J software was used to open the strip picture to get the gray statistics of the selected area.
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2

Evaluation of Fibrosis-related Proteins

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Anti-GAPDH, anti-Hsp90, anti-β-actin, anti-Col І, anti-Col IV, anti-vimentin, anti-α-SMA, anti-fibronectin, and anti-CTGF antibodies were obtained from Abcam (Cambridge Science Park, Cambridge, UK). Anti-p53, p-Smad3, and Smad3 were purchased from Cell Signaling Technology (Danvers, MA, USA), while anti-COXIV and TGF-β were obtained from Proteintech (Rosemont, IL, USA). Anti-DsbA-L antibody was provided by Dr. Feng Liu Lab. All secondary antibodies, MitoTracker Green FM and MitoTracker Red CMXRos, were obtained from Thermo Fisher Scientific (Waltham, MA, USA). Recombinant human TGF-β1 was purchased from R&D Systems (Minneapolis, MN, USA). The cisplatin, aristolochic acid, and Mitochondria Isolation Kit were purchased from Sigma-Aldrich (Shanghai, China). The target sequence for mouse Hsp90β was described as in the previous study40 (link).
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3

Comprehensive Kidney Protein Analysis

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Western blot was performed using kidney cortex as described in our previous study [25 (link)]. The primary antibodies were anti-KEAP1 (Santa Cruz Biotechnology, Dallas, TX, USA; 1:1,000), anti-NRF2 (Santa Cruz Biotechnology; 1:1,000), anti-Histone H3 (Santa Cruz Biotechnology; 1:500), anti-4-HNE (Alpha Diagnostic, San Antonio, TX, USA; 1:3, 000), anti-3-NT (Millipore, Temecula, CA, USA; 1:1,000), anti-TGF-β1 (Cell Signaling, Beverly, MA, USA; 1:500), anti-COL4 (Abcam, Cambridge, MA, USA, 1:500), anti-FN (Santa Cruz Biotechnology; 1:500), anti-Smad7 (Santa Cruz Biotechnology; 1:1,000), anti-Smad3 (Santa Cruz Biotechnology; 1:1,000), anti-p-Smad3 (Cell Signaling; 1:500), anti-p-JNK (Cell Signaling; 1:500), anti-PDCD4 (Santa Cruz Biotechnology; 1:1,000), anti-t-JNK (Cell Signaling; 1:1,000), anti-Actin (Santa Cruz Biotechnology; 1:2,000) and anti-GAPDH (Santa Cruz Biotechnology; 1:3,000). These antibodies were routinely validated when they arrived from suppliers with previous positive tissues that had been defined either based on the knockout or overexpression of the target protein.
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4

Western Blot Analysis of FN, Col-4, and TGFβ1

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From each sample, 16–20 mg of protein was extracted and utilized for Western blot. The antibodies utilized in this research included anti-FN (1:1000; Abcam; HK), anti-Col-4 (1:1000; Abcam; HK), and anti-TGFβ1 (1:1000; Abcam; HK). GAPDH (1:2000; Abcam; HK) was utilized as the loading control.
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5

Assessing Kidney Fibrosis Markers in DN Rats

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The impact of AS-IV on kidney fibrosis in DN rats was examined by Western blot assays. Briefly, renal tissues from individual rats were homogenized by RIPA buffer containing phosphatase and protease inhibitors and centrifuged. After quantifying the protein concentrations using BCA method, the tissue lysates were separated by SDS-PAGE on 8-10% gels and electrically transferred onto PVDF membrane. The membrane was sealed by 5% skimmed milk in TBST buffer and incubated overnight at 4°C with anti-COL4 (Abcam, UK, 1 : 1000), anti-FN (Proteintech, 1 : 1000), and GAPDH (Servicebio, China, 1 : 3000). The bound antibodies were detected with HRP-conjugated secondary antibodies and visualized using the enhanced chemiluminescent reagent. The data were quantitated by densitometry using ImageJ software.
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6

Multicolor Immunostaining of Liver Sinusoids

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Frozen liver tissues were cut into 7 μm sections and fixed in acetone for 10 minutes and permeabilized with 0.5% Triton X-100. Slides were blocked in 10% FBS for 1 hour at room temperature before being incubated with primary antibody overnight at 4°C. Primary antibodies and stains used included anti-COL4 (Southern Biotech 1340-01; Abcam ab19808), anti-COL1 (Southern Biotech 1310-01), anti-CD34 (Abcam ab81289), anti-LYVE1 (R&D Systems AF2125), Phalloidin-TRITC (MilliporeSigma P1951), anti-COL4a1 (Chondrex 7070), anti-COL4 (Abcam ab236640), anti-PDGFRβ (Cell Signaling Technology 3169), anti-α-SMA (Abcam ab7817), and anti-Hsp47 (Novus Biologicals NBP1-97491). After incubation with fluorochrome-coupled secondary antibodies (Invitrogen, A11055, A11057, A21206, A11077, A21202, A10042) and DAPI, images were visualized on a Zeiss LSM 780 confocal microscope. 3D super-resolution images were visualized on a Zeiss LSM 980 Airyscan microscope and reconstructed and viewed with Imaris image analysis software. Colocalization analysis was done as described previously (60) . Three sinusoidal areas were selected for analysis. Fluorescence intensity peaks and ratio of green fluorescence versus red fluorescence were quantified by Zen Image Browser at 4 straight arrows as shown in the schema of hepatic sinusoids (Supplemental Figure 2D).
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7

Immunolabeling and Tissue Clearing Protocol

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Cleared samples were incubated in PBST for 2 h and then blocked with 2% bovine serum albumin (BSA; Sigma‐Aldrich Inc., St. Louis, MO, USA) in PBST for 6 h. The samples were incubated for 24–72 h with the following primary antibodies: anti-OPG (Biorbyt, Cambridge, United Kingdom), anti-RANKL (Biorbyt, Cambridge, United Kingdom), anti-RUNX2 (Santa Cruz Biotechnology Inc., TX, USA), anti-COL-1 (Abcam Inc., Cambridge, United Kingdom), anti-COL-4 (Abcam Inc., Cambridge, United Kingdom), anti-laminin (Santa Cruz Biotechnology Inc., TX, USA) and anti-CD31 (Santa Cruz Biotechnology Inc., TX, USA). The samples were then washed three times in PBST for 24–48 h, followed by incubation with the secondary antibodies and lectin dye (Lycopersicon esculentum (Tomato) Lectin (LEL, TL), DyLight® 594; Vector Laboratories, CA, USA) in PBST for 24–72 h. Secondary antibodies were purchased as conjugates with Alexa Fluor 488/647 (Life Technologies, Darmstadt, Germany) and transferred to nRIMS solution in 50 mL tubes. Immunolabeled samples were washed three times with PBST for 24–72 h and stored in 5 mL nRIMS for 6–24 h. Each sample was incubated in nRIMS in a confocal dish and covered with a 24 mm diameter coverslip. Whole bone samples in nRIMS were sandwiched between two 24 × 60 mm coverslips and small 1-mm-thick magnets.
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