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5 protocols using meso erythritol

1

Quantifying Extracellular Erythritol by HPLC

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To determine extracellular erythritol concentrations, supernatant samples of cultures were subjected to HPLC analysis. HPLC samples were either directly filtered or prepared by treating 500 μl supernatant sample with 50 μl of 35 % (v/v) perchloric acid (Merck), incubation on ice for 10 min and subsequent addition of 27 μl of 7 M KOH (Merck). After vortexing, the precipitate was removed by centrifugation for 5 min at 12,000 rpm and subsequent filtering (Sartorius Stedin Biotech, minisart SRP4, 0.45 μm). Separation of organic acids was achieved by application of a 20 μl aliquot on a Rezex ROA-Organic Acid H+ (8 %) HPLC column (Phenomenex), coupled to a refractive index detector (Jasco, RI-1530), using a flow of 0.5 ml/min and a column temperature of 85 °C. The concentration was determined by comparison of its peak size with known amounts of meso-erythritol (Sigma-Aldrich) and d-erythrose (Sigma-Aldrich).
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2

Analytical Protocols for Precise Metabolite Quantification

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All chemicals were of the highest available purity and purchased from Sigma‐Aldrich (St Louis, MO, USA), VWR (Radnor, PA, USA) and Roth (Karlsruhe, Germany). Primers were obtained from LGC Genomics (Vienna, Austria) or Sigma‐Aldrich. Restriction endonucleases, T4 DNA ligase and Phusion polymerase were obtained from Thermo Fisher Scientific Biosciences (St Leon‐Rot, Germany). GoTaq polymerase was purchased from Promega (Madison, WI, USA). Zeocin and the pPICZB vector were obtained from Invitrogen (Carlsbad, CA, USA). The 2‐keto‐GLC standard, meso‐erythritol, LC‐MS grade distilled water, ethoxylamine hydrochloride, water‐free pyridine and N‐methyl‐N‐(trimethylsilyl)trifluoroacetamide with 1% trimethylchlorosilane in water‐free pyridine were purchased from Sigma‐Aldrich.
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3

Comprehensive Metabolite Profiling Protocol

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Standard compounds of sugar as glycerol, meso-erythritol, xylose, arabinose, ribose, xylitol, arabitol, adonitol, fructose, mannose, glucose, mannitol, myo-inositol, sucrose, maltose, and reagents, i.e., N-methyl-N-(trimethylsilyl)-trifluoroacetamide (MSTFA), trimethylchlorosilane (TMCS), 2-methyl 3-heptanone were purchased from Sigma-Aldrich (St. Louis, MO, United States). Pyridine was obtained from Merck (Darmstadt, Germany), O-methylhydroxylamine hydrochloride from TCI (Tokyo, Japan), d27-myristic acid from CIL (Tewksbury, MA, United States), methanol from RCI Labscan (Bangkok, Thailand), fatty acid methyl ester (FAME) mixture was purchased from Agilent Technologies (Bangkok, Thailand), and n-alkanes mixture (C7-C40) from Supelco, Inc. (Bellefonte, PA, United States). Sodium chloride (Carlo Erba, Chaussée du Vexin, Val-de-Reuil, France) and a 120 μm DVB/CWR/PDMS SPME Arrow (CTC Analytics AG, Zwingen, Switzerland) were utilized for volatile extraction.
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Sodium Alginate Crosslinking Agents

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Sodium alginate (high ratio of mannuronic:guluronic
acid, Mw ≈ 12–40 kDa), ethylene
glycol, glycerol, meso-erythritol, d-(+)-arabitol, d-mannitol, and d-sorbitol were purchased from Sigma–Aldrich.
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5

Analytical Standards for Metabolomic Analysis

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The reference compounds (sodium pyruvate, sodium lactate, citric acid monohydrate, succinic acid, malic acid, fumaric acid, 2-hydroxybutyric acid, oxalic acid, 3-hydroxybutyric acid, glycine, l-serine, l-valine, l-threonine, l-alanine, l-aspartic acid, l-glutamine, l-glutamic acid, l-leucine, l-isoleucine, l-tyrosine, erythronate, meso-erythritol, α-ketoglutaric acid, glyceric acid) were purchased from Sigma-Aldrich, Munich, Germany. U13C-Ribitol (CIL Inc., Tewksbury, MA, USA), pentanedioic-d6-acid (C/D/N isotopes Inc., Quebec, QC, Canada), and norleucine (Sigma-Aldrich, Munich, Germany) were used as internal standards during metabolite extraction. U13C-Glutamate, U13C-glucose, and U13C-glutamine were purchased from CIL Inc., Tewksbury, MA, USA. For metabolite extraction, high purity HPLC (or higher) grade solvents methanol, acetone, isopropanol, and acetonitrile, and MQ water (18.2 M·cm, <3 ppb TOC) were used.
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