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Sybr premix ex taqtm kit

Manufactured by Agilent Technologies
Sourced in United States

The SYBR Premix Ex Taq™ kit is a reagent designed for real-time PCR amplification and detection. It contains a pre-mixed solution of SYBR Green I dye, Taq DNA polymerase, and necessary buffers and reagents for efficient and sensitive real-time PCR analysis.

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2 protocols using sybr premix ex taqtm kit

1

Relative Expression of lncRNAs and miRNAs in RA FLS

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Relative expression levels of lncRNAs and miRNAs in RA FLS were determined by real-time PCR (26 (link)). Total RNA was isolated by a TRIzol reagent and quantified with NanoDrop ND-2000 (Thermo Scientific). Quality control was performed by Agilent Bioanalyzer 2100 (Agilent Technologies Inc.). The RNA was reverse transcribed by a PrimeScriptTM RT reagent kit containing a gDNA eraser (Takara). Real-time PCR was conducted with a SYBR Premix Ex TaqTM kit (TliRNaseH Plus) in an Mx3005P qPCR System (Agilent Technologies Inc.). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was used as an internal control. The primers used were listed below: WAKMAR2: 5′-GGCCTCAGTGAGGTAAATCG-3′; 5′-CATACCACTACACTCCAGC-3′ and GAPDH: 5′-AACTTTGGCATTGTGGAAGG-3′; 5′-GGATGCAGGGATGATGTTCT-3′. The expressions of miRNAs were detected by stem-loop real-time PCR. The miRNAs from total RNA were reverse transcribed and subjected to amplification using Hairpin-it™ MicroRNAs Quantitation kits (GenePharma), which contained both primers of miRNAs and the internal control U6. The obtained data were analyzed by the MXProv 4.1 Sequence Detection System and calculated according to the 2−ΔΔCt formula (27 (link)).
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2

Validating RNA-Seq with qRT-PCR Analysis

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To validate the RNA-Seq results, qRT-PCR analysis was performed using 96 real-time PCR systems (Bio-Rad, USA) equipped with a SYBR ® Premix Ex Taq TM kit (Agilent Aria (v1.5) Software) (Takara, China). IDT (https://eu.idtdna.com/pages) software was used to design for QRT-PCR gene primers (SupplementaryTable S4).
Successive qRT-PCR experiments were done using three biological and three technical replicates, and melting curve analysis was performed following every amplification to confirm product specificity. To normalize, the alphatubulin gene from T. terrestris was used as an internal reference gene, and each sample was divided into three technical duplicates. The relative expression levels of each gene were calculated using the 2 -ΔΔCt method (Livak et al. 2001 ).
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