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7 protocols using chemidoc chemiluminescence imaging system

1

Adipose Tissue Protein Extraction and Western Blot

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Briefly, total protein (10 μg) was extracted from adipose tissue and standardized against a standard curve using a Peirce BCA kit (ThermoFisher, Waltham, MA). Agarose gels were run under standard conditions and transferred using a TurboBlot transfer (BioRad Laboratories, Hercules CA) system onto PVDF membranes. Membranes were imaged using a Chemidoc chemiluminescence imaging system (BioRad Laboratories, Hercules CA) and ECL reagents (EMD Millipore, Burlington MA)
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2

Western Blot Analysis of Protein Expression

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Cells were added to a 6-well plate (3×105 cells/well) and incubated for 24 h. Media was then removed and replaced with fresh media containing liposomes. At specified timepoints, the plates were placed on ice, washed once with cold DPBS, and incubated for 15 min with 1 vol% NP40 lysis buffer (50 μL) containing protease and phosphatase inhibitors. The wells were then scraped and the solution added to cold microcentrifuge tubes. Cellular debris was removed by centrifugation (4°C, 5 min). Protein concentrations in samples were determined using the Bradford assay. Equal total protein amounts (~30 μg) were added to each lane of the gel (4–20% gradient). After electrophoresis, the proteins were transferred onto PVDF membranes, blocked with 5% (w/v) milk, and stained with primary antibody overnight. After incubation with the secondary antibody for 1 h, the membrane was incubated with the Western lightning ECL pro substrate (10 min) and then imaged using a ChemiDoc chemiluminescence imaging system (Bio-Rad; Hercules, CA). Western blot images were processed using Image Lab software (Bio-Rad; Hercules, CA). Fiji software was used for densitometry calculations. Loading controls were used as a normalization factor for densitometric calculations.
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3

Immunoassay for Human TIMP-2 Detection

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A Q‐Plex single‐plex immunoassay for chemiluminescence‐based detection of human TIMP‐2 was employed according to the manufacturer's protocol (Quansys Biosciences, Logan, UT; range: 27·43 to 20 000 pg/ml; lower limit of detection: 15·9 pg/ml; intra‐assay coefficient of variation: 8%; inter‐assay coefficient of variation: 12%). The kit contained a freeze‐dried calibrator for solubilization in sample buffer and for generating a seven‐point standard curve. Signals were detected using ChemiDoc chemiluminescence imaging system (Biorad), and TIMP‐2 was quantified with Q‐View Software (Quansys) in relation to an 8‐point standard curve obtained by serial dilution of recombinant TIMP‐2. All samples were diluted 1:20 with sample dilution buffer and measured in duplicates. Plasma from fresh residual umbilical cord blood (n = 3, 2 ml each) was used as a positive control.
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4

Quantifying AML Cell Signaling Proteins

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AML cells (MV4-11 and MOLM-13) were drugged for 24 h, followed by protein extraction using RIPA buffer (Cell Signaling Technology) supplemented with PMSF. Cell pellets were incubated in RIPA buffer with constant agitation for 30 min, followed by sonication. Protein lysate was quantified using Pierce™ BCA Protein Assay Kit (ThermoFischer Scientific). 30 µg of protein was loaded into a Mini-PROTEAN TGX Stain-Free Precast Gel (Bio-Rad) and ran at 120 V for 1–2 h. Blots were developed using a ChemiDoc Chemiluminescence Imaging System (Bio-Rad) or by the Odyssey CLX Fluorescence Imaging System (Li-COR). Antibodies used in the presented studies purchased from Cell Signaling Technology included total β-catenin (#8480S), phosphorylated β-catenin (#9561S), non-phosphorylated β-catenin (cat#8814S), and β-actin (#3700S). Antibodies purchased from Abcam include LRP6 (ab134146) and phosphorlated-LRP6 (ab76417).
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5

Cytokine Antibody Array Analysis

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The expression levels of cytokines and chemokines were analyzed using a Human Cytokine Antibody Array (C5) (RayBiotech, Peachtree Corners, GA, USA). Following the manufacturer’s instructions, antibody-embedded membranes were incubated with 1 mL of CM at 4 °C overnight, followed by incubation with HRP-streptavidin at room temperature. Proteins were then visualized using a Chemidoc chemiluminescence imaging system (Bio-Rad, Hercules, CA, USA) and chemiluminescent substrate reagent. The signal intensities were quantified using Image Lab software (Bio-Rad, Hercules, CA, USA).
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6

Detecting K48-Linked Polyubiquitination

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Cells were lysed in Cell Lysis Buffer (Cell Signalling Tech. 9803) and lysates were loaded on 12% SDS-PAGE gels then transferred to nitrocellulose membranes. Ponceau S stain was applied to confirm equal protein loading. Membranes were blocked with blocking buffer, which contains 5% non-fat dry milk in TBST for 1 h. The membranes were incubated with K48-linkage Specific Polyubiquitin Antibody (Cell Signaling Tech. 4289S, 1:1000 dilution in blocking buffer) for overnight at +4 °C. Then, the membranes were washed 3 times with TBST and incubated with HRP conjugated secondary antibody (Calbiochem, D0016365, 1:10000 dilution in blocking buffer) at room temperature for 2 h. Finally, the membranes were screened through ChemiDoc chemiluminescence imaging system (Bio-Rad, USA).
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7

Temporal Expression of PfHsp70-3 in P. falciparum

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Infected P. falciparum parasites (clone 3D7) were cultured based on a previously described method (Trager and Jensen 1976) , and synchronized at the ring stage with 5% sorbitol. The parasites were then split into six flasks and incubated at 37 °C for time course expression analysis. Infected erythrocytes were harvested by centrifugation at eight hour intervals over the 48 hour intra-erythrocytic parasite developmental life cycle. Parasite pellets obtained by saponin lysis were frozen at -80°C for further analysis. The expression of PfHsp70-3 was analyzed by SDS-PAGE and immunodetection was carried out on the western blots using Clarity TM Western ECL blotting kit (Bio-Rad, USA) as per the manufacturer's instructions, and captured with a Chemidoc chemiluminescence imaging system (Bio-Rad, USA). Anti-PfHsp70-3 antibody and HRP-conjugated goat anti-rabbit secondary antibodies were used. Rabbit antiactin antibody (1:4000 dilutions) and uninfected erythrocytes were used as loading and negative controls, respectively.
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