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Pcl eco packaging vector

Manufactured by Novus Biologicals

The PCL-Eco packaging vector is a lab equipment product designed for use in molecular biology applications. It serves as a tool for the packaging and delivery of genetic material. The core function of this vector is to facilitate the encapsulation and transport of nucleic acids, such as DNA or RNA, for various experimental purposes. The description of this product is provided in a factual and unbiased manner, without any interpretation or extrapolation on its intended use.

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5 protocols using pcl eco packaging vector

1

Retrovirus and Lentivirus Production

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These assays were conducted as described previously (Jiang et al., 2012 (link); Li et al., 2012 (link)) with some modifications. Briefly, retroviruses or lentiviruses were produced in 293T cells by co-transfection of individual expression construct with the pCL-Eco packaging vector (IMGENEX, San Diego, CA) or the pMD2.G:pMDLg/pRRE:pRSV-Rev packaging mix (individually purchased from Addgene), respectively. The virus particles were harvested at 48 and 72 hours after transfection and added to cells with or without concentrating, and two rounds of “spinoculation” were performed to allow the infection of viruses.
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2

Lentiviral and Retroviral Transduction Protocol

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Detailed methods are described in our previous publications.19 (link),45 (link) Briefly, retroviruses or lentiviruses were produced in 293T cells by co-transfection of an individual expression construct with the pCL-Eco packaging vector (IMGENEX, San Diego, CA) or the pMD2.G:pMDLg/pRRE:pRSV-Rev packaging mix (individually purchased from Addgene), respectively. The media was replaced 8 h post-transfection and the supernatant was filtered through a 0.45 μm syringe filter and then collected at 48- and 72-h post-transfection. The supernatants from both time points were pooled for transduction or concentrated with PEG-It (Systems Bioscience, LV825A-1) before being aliquoted and frozen at −80 °C until use. Media containing viruses was added to cells with 8 μg/mL polybrene (Sigma-Aldrich) and one or two rounds of spinoculation were performed for transduction. The media was replaced 24 h later and 2 μg/mL puromycin was added for selection if needed.
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3

Transduction and Culture of MLL-ENL-ERtm Cells

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MONOMAC-6 cells were maintained in RPMI 1640 supplemented with 10% FBS, 1% HEPES, 2 mM L-Glutamine, 100×Non-Essential Amino Acid (Invitrogen), 1 mM sodium pyruvate, 9 μg/ml insulin (Invitrogen) and 1% penicillin-streptomycin. Plasmids were transfected into MONOMAC-6 cells with Cell Line Nucleofector Kit V following program T-027 using the Amaxa® Nucleofector® Technology (Amaxa Biosystems, Berlin, Germany). Experiments were performed 48 hours after transfection.
The MLL-ENL-ERtm cell line was kept in RPMI 1640 supplemented with interleukin 3 (IL-3), IL-6, and granulocyte-macrophage colony-stimulating factor (GM-CSF), 10 ng/ml; SCF 100 ng/ml; 10% FBS and 1% penicillin-streptomycin. 4-Hydroxy-tamoxifen (4-OHT) (Sigma-Aldrich, St. Louis, MO) was added at a 100 nM final concentration as a 1 mM stock solution in ethanol.
Retrovirus was used to transduce MLL-ENL-ERtm cells. Retrovirus for each construct was produced in 293T cells by co-transfecting the retroviral construct and pCL-Eco packaging vector (IMGENEX, San Diego, CA) as previously described[52 (link); 53 (link)]. Rat1a cells were used to determine the viral titer. BM progenitor Cells were co-transduced with MSCV-neo vector or MSCV-neo-MLL-AF9 together with MSCV-PIG vector or MSCV-PIG-miR-26a, or MSCV-PIG-miR-29a constructs, respectively, through “spinoculation”.
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4

Viral RNA Extraction and Sequencing of Mutant Cell Clones

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To retrieve the nucleotide sequences of the mutants, cell clones individually transduced with the replication-repaired pQCXIP-R-EGFP-TA mutants were seeded in a 96-well format plate (TC plate 96-well, standard, F, Sarstedt) and transfected with the pCL-ECO packaging vector (Imgenex) using Fugene HD (Promega). Transfection with pCL-ECO enables virus production from the cells transduced with pQCXIP-R-EGFP-TA mutants. After 48 h, the supernatant was collected for viral RNA extraction (Murdoch et al., 1997 (link)). Briefly, Trizol LS (ThermoFisher) was added to the supernatant in a 3:1 ratio along with chloroform and yeast tRNA under RNase-free conditions. After centrifugation and isopropanol precipitation, viral RNA was subjected to reverse transcription by using SuperScript III Reverse transcription (ThermoFisher) to generate cDNA. Sequence analysis was performed at the Centre for Applied Genomics sequencing facility.
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5

Retroviral and Lentiviral Transduction Protocols

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These assays were conducted as described previously 8 (link), 13 (link). Briefly, retroviruses or lentiviruses were produced in 293T cells by co-transfection of individual expression construct with the pCL-Eco packaging vector (IMGENEX, San Diego, CA) or the pMD2.G:pMDLg/pRRE:pRSV-Rev packaging mix (individually purchased from Addgene), respectively. The virus particles were harvested at 48 and 72 hours after transfection and added to cells with or without concentrating, and one or two rounds of “spinoculation” were performed to allow the infection of viruses. In some cases, when co-infecting AML cells with overexpression and shRNA viruses, overexpression viruses were spinned down first in RetroNectin-coating plates before cells and shRNA viruses were added for spinoculation.
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