The largest database of trusted experimental protocols

Universal sybr green master mix

Manufactured by Roche
Sourced in United States, China, Australia, Germany, Switzerland

The Universal SYBR Green Master Mix is a ready-to-use solution formulated for real-time PCR (qPCR) and RT-qPCR applications. It contains SYBR Green I dye, necessary reagents, and a hot-start DNA polymerase.

Automatically generated - may contain errors

32 protocols using universal sybr green master mix

1

Quantitative Real-Time PCR Analysis of Immune Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol according to the manufacturer’s instructions. First-strand cDNA was synthesized using upper standard II (Invitrogen), using 1 µg total RNA for each cDNA synthesis reaction. Real-time PCR was performed using SYBR Green Universal Master Mix (Roche) and a primer mixture. GAPDH was used as the internal reference for mRNA expression. The primers used for real-time qPCR were presented in Table 2.

The sequence of the primers used in real-time PCR.

GenesForwards Primer (5’-3’)Reverse Primer (5’-3’)
TET2GCCACTACCACACCACCACCGCATCGGAGAAGGGCTGCAT
cGASCAGAAAAAGAGCGCCCCGGATCTTGGCTTCGTGGAGCAGC
STINGGCCACCCCCTTGCAGACTTTCCTGGTAGGCAATGAGGCGG
TBK1CAACCTGGAAGCGGCAGAGTGCGTCTGCCAGTGATCCACC
GAPDHCACCATCTTCCAGGAGCGAGAAATGAGCCCCAGCCTTCTC
+ Open protocol
+ Expand
2

Quantification of PAK4 mRNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using TRIzol reagent (Invitrogen) according to the manufacturer's protocol. For the reverse transcription reaction, TaqMan MicroRNA Reverse Transcription Kit (Applied Biosystems) was applied. qRT-PCR was carried out in 7500 Fast Real-Time PCR System (Applied Biosystem) by using SYBR Green Universal Master Mix (Roche). Briefly, the following PCR program was performed: 50°C for 2 min and 95°C for 5 min, followed by 40 cycles for 15 s at 95°C and 56°C for 45 s. The sequence information is as follows: PAK4, forward primer: 5′-TCCCCCTGAGCCATTGTG-3′ and reverse primer: 5′-TG ACCTGTCTCCCCATCCA-3′; β-actin, forward primer: 5′-CTA TCGGCAA TGAGCGGTTC-3′ and reverse primer: 5′-GATCTTGATCTTCATGGTGCTAGG-3′. Mature PAK4 mRNA levels in cells were measured by 2−ΔΔCT method, with β-actin as an internal control.
+ Open protocol
+ Expand
3

Quantitative RT-PCR Analysis of Developmental Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using TRI reagent and reverse transcribed using random hexamers and Superscript III Reverse Transcriptase (Invitrogen) in a final volume of 20 μl. cDNA was diluted 10-fold, 3 μl of which was used as template for each qRT-PCR. qRT-PCRs were performed using SYBR Green Universal Master Mix (Roche) in a final volume of 20 μl, and each was performed in triplicate, with a minimum of three biological repeats. A dilution standard curve was used to determine the relative expression levels.
Primer Sequences:
AXIN2 F: 5′-GCCGACTTCAAAAGCAAAAT-3′
AXIN2 R: 5′-GTAGGGGTTAACGGGATCGT-3′
BMP2 F: 5′-CCAACACCGTGTGCAGCTTCCA-3′
BMP2 R: 5′-GAAACGTCGTGCTGTTTTCCCAC-3′
BMP4 F: 5′-TGAGGAGCTTCCACCATGA-3′
BMP4 R: 5′-TGCTGAGGTTGAAGACGAAG-3′
BMP7 F: 5′-CGAACGCTTCGATAATGAAA-3′
BMP7 R: 5′-TTCTGGAGTCGAGCAGGAAC-3′
EDA F: 5′-TGGTCTCGCATCACTATGAAC-3′
EDA R: 5′-AATACTCCGAGTGCATTGCAG-3′
EDAR F: 5′-TTCTTTCGAGCCACTGTCCT-3′
EDAR R: 5′-CGAGGTCTGTTTTCCAGCAT-3′
ETV5 F: 5′-AGGCCTGGCTAGCTGAAGCTCA-3′
ETV5 R: 5′-ATCTTGGCTGGAGGTGGGGCAT-3′
FGF20 F: 5′-GCCAAGACCACAGCCTCTT-3′
FGF20 R: 5′-TTCCAAGGTAAAGGCCACTG-3′
GAPDH F: 5′-GACAACTTTGGCATTGTGGA-3′
GAPDH R: 5′-GGCTGTGATGGCATGGAC-3′
+ Open protocol
+ Expand
4

Quantification of miRNA and Cytokine Receptors

Check if the same lab product or an alternative is used in the 5 most similar protocols
The treated cells were harvested and incubated with TRIzol reagent (Invitrogen, China). Total RNA was extracted from these cells and 1.0 µg of RNA was directly utilized for reverse transcription into cDNA by PrimerScript RT Master Mix kit (Takara, Dalian, China) following the manufacturer’s instructions. The resultant cDNA was analyzed by qPCR using SYBR Green Universal Master mix (Roche Diagnostics). All primers utilized in the study were acquired from Sangon Biotech (Shanghai). U6 and GAPDH were utilized as the internal controls to normalize the Ct values for miR-155-5p and the inflammatory cytokine receptors, respectively, to determine their relative expression.
+ Open protocol
+ Expand
5

Quantitative Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from GC cells or tissues using TRIzol Reagent (Invitrogen, 15,596,018). RNase R treatment was carried out for 15 min at 37 °C using 3 U/mg RNase R (Epicenter). For Quantitative real-time PCR (RT-PCR), 500 ng of treated RNA was directly reverse transcribed using Prime Script RT Master Mix (Takara, Japan) and either random or oligo(dT) primers. Reverse transcription of miRNA was performed using a New Poly(A) Tailing Kit (ThermoFisher Scientific, China). mRNA was reverse transcribed into cDNA with a PrimeScript RT Master Mix Kit (Takara, RR036A, Japan). cDNA was amplified using Universal SYBR Green Master Mix (4,913,914,001, Roche, Shanghai, China). The CT value was measured during the exponential growth phase. Relative gene expression levels were determined using the 2-△△CT method. The primers used are listed in Additional file 1: Table S2.
+ Open protocol
+ Expand
6

Comprehensive RNA Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted by TRIzol reagent (Invitrogen, Carlsbad, CA, USA), and the nuclear and cytoplasmic fractions were isolated by NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Scientific) according to the manufacturer’s protocols. The concentration and quality of isolated RNA were measured by a NanoDrop spectrophotometer (ND-100, Thermo). Reverse transcription of miRNA was performed using a New Poly(A) Tailing Kit (Thermo Fisher Scientific). For circRNA and mRNA, total RNA was reverse transcribed to cDNA by a PrimeScript RT Master Mix Kit (TaKaRa, RR036A, Japan). qRT-PCR was conducted using Universal SYBR Green Master Mix (4913914001, Roche) with a 7500 Real-Time PCR System (Applied Biosystems, USA). The levels of miRNA were normalized to that of small nuclear U6, and GAPDH was used as an internal control for the relative expression of circRNAs and mRNAs. The relative expression levels were calculated using the 2−ΔΔCT method, and the primers used are listed in Supplementary Table S1.
+ Open protocol
+ Expand
7

Quantifying miRNA Expression via RT-qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Total RNA Extraction Kit (Solarbio, China) was used to perform RNA extractions. For miRNA research, RNAs were reversed into cDNA by miRNA First Strand cDNA Synthesis (Sangon, China). Quantitative polymerase chain reaction (qPCR) was performed on the detection system with Universal SYBR® Green Master Mix (Roche Light Cycler 96). β-actin and U6 were used as internal references. The results of cell lines were computed by the 2−ΔΔCt method. Primer sequences are listed in Table 1.

Primer sequences used for RT-qPCR

Gene or miRNASequence (5′to 3′)
mmu-miR-1a-3pCGCACGCGTGGAATGTAAAGAAGTATG
U6 (forward)CTCGCTTCGGCAGCACA
U6 (reverse)AACGCTTCACGAATTTGCGT
Map3k1 (forward)TTATCGGGCCTCAGAACTGC
Map3k1 (reverse)ATGGTGTTACGAGACGGAGC
Ovine β-actin (forward)CCAAAGCCAACCGTGAGAA
Ovine β-actin (reverse)AGAGGCGTACAGGGACAGCA
+ Open protocol
+ Expand
8

Comprehensive RNA Extraction and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cell lines and frozen tissues with TRIzol reagent (15596018, Invitrogen, USA) according to the manufacturer’s protocol. A New Poly(A) Tailing Kit (Thermo Fisher Scientific, China) was used to reverse transcribe miRNAs into cDNA. mRNA was reverse-transcribed into cDNA with a PrimeScript RT Master Mix Kit (TaKaRa, RR036A, Japan). cDNA was amplified with a 7500 Real-Time PCR System (7500, Applied Biosystems, USA) with Universal SYBR Green Master Mix (4913914001, Roche, Shanghai, China).
+ Open protocol
+ Expand
9

Quantitative RNA Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Trizol Reagent(Invitrogen,15,596,018) were used to extract RNA from GC cell lines and tumor tissues. We used PrimeScript RT Master Mix Kit (TaKaRa, RR036A, Japan) to reverse-transcribe the mRNA and New Poly(A) Tailing Kit (ThermoFisher Scientific, China) to reverse-transcribed the miRNA both into cDNA. Subsequently we used Universal SYBR Green Master Mix (4,913,914,001, Roche, Shanghai, China) to perform polymerase chain reactions in order to amplify the cDNA to the same quantity level. We used 2-△△CT analysis method to calculate the Ct value during the exponential amplification phase. Meanwhile, we used β-actin and RNU6–1 as the internal references for mRNA and miRNA respectively.
+ Open protocol
+ Expand
10

Quantitative RT-PCR of Mouse T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from CD4+ T cells or Th17 cells using Trizol reagent (Invitrogen, USA), and cDNA was subsequently generated by reverse transcription kit (Roche, Germany), following the manufacturers’ instructions. The PCR reactions (94°C, 20 s; 60°C, 20 s; 72°C, 20 s) were performed on a Rotor-Gene 3000 Real-Time Cycler (Corbett Research, Australia) using Universal SYBR Green Master Mix (Roche, Germany). Species-specific mouse primers were used as follows:
Relative gene expression was calculated as fold-change over control using the 2−ΔΔCt method after normalization to β-actin.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!