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12 protocols using anti cd27

1

Immunophenotyping of Cryopreserved PBMCs

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Cryopreserved PBMC were isolated and used for immunophenotypic staining as previously described (108 (link)). Cells were stained with Zombie NIR fixable viability stain (BioLegend, San Diego, USA) and the following anti-human monoclonal fluorochrome-conjugated antibodies: anti-CD45RA, anti-CD4, anti-TCR-γ/δ (BD Biosciences, Heidelberg, Germany), anti-TCR-Vδ2 (Beckman Coulter Life Sciences, Indianapolis, USA), anti–HLA-DR, anti-CD27, anti-CD279 (PD-1), anti-TIGIT, anti-CD8, anti-CD28, anti-CD39, anti-CD38, anti-CD19, anti-CD3, anti-CD73 and anti-CD14 (all BioLegend) (Supplementary Table 2). Cells were incubated for 30 minutes at room temperature with the respective antibodies. After washing, cells were fixated with 4% paraformaldehyde. All samples were run on a Becton Dickinson LSR Fortessa flow cytometer with FACS Diva version 8 (BD Biosciences).
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2

Purification and Characterization of B Cells

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Peripheral B cells were purified from the blood of patients and HD by Ficoll density gradient purification followed by positive selection using CD20 magnetic beads (Miltenyi Biotec). Bone marrow and splenic B cells from humanized mice were enriched using anti-human CD19 magnetic beads (Miltenyi Biotec). Purified B cells were then stained with the following antibodies: anti-CD10 (clone: HI10A), anti-CD19 (clone: HIB19), anti-CD21 (clone: B-LY4), anti-CD27 (clone: O323), anti-CD34 (clone: 581), anti-CD45 (clone: HI30), anti-CD69 (clone: FN50), anti-CD86 (clone: IT2.2), anti-CXCR4 (clone: 12G5), anti-IgM (clone: MHM88), anti-IgD (clone: IA6–2), anti-PD-1 (clone: EH12.2H7), anti-RANKL (clone: MIH24) (all from Biolegend), anti-CD3 (clone: OKT3) and 7AAD (eBioscience), and annexin V (AF488 conjugated) (ThermoFisher Scientific). Intracellular staining was performed with anti-p-ATM (clone: 10H11.E12) and anti-γ-H2AX (clone: 2F3) (Biolegend) after staining for surface markers using a fixation-permeabilization solution kit (eBioscience). Flow cytometry was performed using a BD LSRII, and the data were analyzed using Flow Jo software (Treestar).
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3

Isolation and Characterization of SARS-CoV-2 S-RBD-Specific Memory B Cells

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Isolated PBMCs were incubated with His-tagged SARS-CoV-2 S-RBD recombinant protein (Cell Signaling Technology, Danvers, MA, USA) for 30 min on ice. Cells were washed using phosphate-buffered saline (Nacalai Tesque, Kyoto, Japan) with 4% fetal bovine serum (Thermo Fisher Scientific) before staining with a fluorescence-conjugated antibody cocktail for 30 min on ice. The following antibodies were used; CD3 (SK7), CD4 (SK3), CD8 (RPA-T8), CD56 (B159), CD11b (D12), CD19 (HIB19), CD27 (O323), CD38 (HIT2), and human IgG (G18-145), all from BD Biosciences; FITC-conjugated His tag antibody from Abcam (Cambridge, UK); and anti-CD27 from BioLegend (San Diego, CA, USA). S-RBD-specific Bmems were defined as CD3-CD4-CD8-CD56-CD11b-CD19+CD27+IgG+His+ live cells. Single cells were sorted using a FACS AriaII instrument (BD Biosciences) into 96-well plates containing 4 μL/well of 8U RNAsin (Promega, Madison, WI, USA), 4U of recombinant RNase inhibitor (Takara Bio, Shiga, Japan), 10 mM DTT (Promega), and 10× PBS. All data were analyzed using the FlowJo software (TreeStar, San Carlos, CA).
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4

Multiparametric Flow Cytometry Immune Profiling

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Cell suspensions were stained with: anti-CD45 (30-F11); anti-CD45.1 (A20); anti-CD45.2 (104); anti-CD11c (N418); anti-CD11b (Mi/70); anti-CD127 (IL7Rα; A7R34); anti-CD27(LG.7F9); anti-CD8α (53-6.7); anti-CD19 (eBio1D3); anti-CXCR4(L276F12); anti-NK1.1 (PK136); anti-CD3ε (eBio500A2); anti-TER119 (TER-119); anti-Gr1 (RB6-8C5); anti-CD4 (RM4-5); anti-CD25 (PC61); anti-CD117 (c-Kit; 2B8); anti-CD90.2 (Thy1.2; 53-2.1); anti-TCRβ (H57-595); anti-TCRγδ (GL3); anti-B220 (RA3-6B2); anti-KLRG1 (2F1/KLRG1); anti-Ly-6A/E (Sca1; D7); anti-CCR9 (CW-1.2); anti-IL-17 (TC11-18H10.1); anti-rat IgG1k isotype control (RTK2071); anti-streptavidin fluorochrome conjugates from Biolegend; anti-α4β7 (DATK32); anti-Flt3 (A2F10); anti-NKp46 (29A1.4); anti-CD49b (DX5); anti-Ki67 (SolA15); anti-rat IgG2ak isotype control (eBR2a); anti-IL-22 (1H8PWSR); anti-rat IgG1k isotype control (eBRG1); anti-EOMES (Dan11mag); anti-Tbet (eBio4B10); anti-FOPX3 (FJK-16s); anti-GATA3 (TWAJ); anti-CD16/CD32 (93); 7AAD viability dye from eBiosciences; anti-CD196 (CCR6; 140706) from BD Biosciences; anti-RORγt (Q31-378) and anti-mouse IgG2ak isotype control (G155-178) from BD Pharmingen. LIVE/DEAD Fixable Aqua Dead Cell Stain Kit was purchased from Invitrogen.
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5

Vδ2+ T Cell Differentiation Upon DC Coculture

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Peripheral blood lymphocytes (PBLs) from HSCT recipients were cocultured with pamidronate-pretreated autologous or allogeneic (refers to third-party healthy subjects) DCs at the ratio of 2:1, at a final of 3 × 105 cells/well in 96-well plates. In some experiments, the neutralization antibody anti-NKG2D (10 μg/ml, BioLegend, USA) was used for blocking NKG2D during coculture. After 7 and 14 days of coculture, the percentages and differentiation and activation phenotypes of Vδ2+ T cells were detected by flow cytometry. Different combinations of monoclonal antibodies allowed identifying the differentiation profile of Vδ2+ T cells by the expression of CD45RO and CD27 (Naive: CD45ROCD27+, Central Memory (CM): CD45RO+CD27+, Effector Memory (EM): CD45RO+CD27 and terminal differentiation (TD): CD45ROCD27). For cell differentiation and activation assay, the cultured cells were stained with fluorochrome-labeled anti-CD27, anti-CD45RO, anti-HLA-DR, anti-CD38, and anti-NKG2D antibodies (BioLegend, USA).
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6

Comprehensive T-cell Phenotyping by Flow Cytometry

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All lymphocytes, pre- and post-selection, were analyzed using flow cytometry and the following antibodies: anti-CD45 (AF700; clone HI300), anti-CD3 (PE, FITC or PE-Cy7; clone OKT3), anti-CD8 (PE or BV510; clone HIT8a), anti-CD4 (BV421 or BV785; clone OKT4), anti-CD27 (BV785; clone 323), anti-CD14 (PC7; clone HCD14), anti-CD56 (APC; clone MEM-188), anti-EGFR (PE; clone AY13), TCRαβ (APC-Fire750; clone IP26) and anti-CD19 (BV421; clone HIB19) (all from Biolegend). To determine T cell activation state, T cells were stained with CD69 antibody (APC-Fire750; clone FN50) and CD25 antibody (BV650; clone BC96) (Biolegend) at indicated time points after initial stimulation. For live/dead discrimination propidium iodide (Sigma) was used. CAR expression has been monitored using an anti-idiotype antibody specific for the CD19-directed CAR, an in-house developed antibody. Cell associated fluorescence was analyzed by flow cytometry using either CytoFLEX or CytoFLEX LX flow cytometers (Beckman Coulter), unless indicated otherwise.
Live nucleated cells were enumerated pre- and post-selection (including fractions and downstream culture) using either NuceloCounter NC-3000 (Chemotec) or XN-350 Cell Counter (Sysmex) according to manufacturers’ instructions.
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7

Comprehensive NK Cell Phenotyping

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The following fluorescently conjugated antibodies were used for phenotypic analysis of NK cells: anti-LFA-1 (363404); anti-CXCR3 (353720); anti-PD-1 (329906); anti-CD107a (328612); anti-NKP44 (325116); anti-CD158e1 (312706); anti-CD158d (347006); anti-CD27 (356412); anti-CCR4 (359412); anti-DNAM-1 (338316); anti-CD16 (302040); anti-Granzyme B (515406); anti-CD62L (304806); anti-CD69 (310910); anti-NKP80 (346706); anti-NKP30 (325210); anti-CD158f (341304); anti-CD158b (312612); anti-Tim-3 (345012); anti-CD94 (305504); anti-TIGIT (372706); anti-TRAIL (308206); anti-CD57 (322306); anti-CX3CR1 (341610); anti-NKG2D (320808); anti-Perforin (353310); anti-Ki67 (350504); anti-IFN-γ (506518); anti-CD94 (305506); anti-NKp46 (331916); anti-CTLA4 (369614); anti-CD96 (338416); anti-41BB (309818); anti-CD25 (356108) were purchased from Biolegend. anti-CD159a/NKG2A (FAB1059P) and anti-NKG2C (FAB138G) were purchased from R&D.
The following fluorescently conjugated antibodies were used to identify immune cell types in eNK or PBMC: anti-human Lineage Cocktail (348803); anti-CD56 (362550); anti-CD3 (300430); anti-CD33 (366620); anti-HLA-DR (307606); anti-CD14 (301836); anti-CD19 (302242); anti-CD11b (301322); anti-CD25 (356108); and anti-FOXP3 (320108) were purchased from Biolegend, San Diego, CA, USA.
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8

Immunophenotyping and T Cell Function

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ASTRLs and PBMCs were immunophenotyped for various cell surface markers by flow cytometry with fluorophore conjugated human anti-CD3, anti-CD4, anti-CD8, anti-CD25, anti-CD127, anti-CD39 and anti-CD73 anti-CTLA4, anti-GITR, anti-ICOS, anti-CD45RA, anti-CD226, anti-LAP, anti-GARP, anti-CD56, anti-CD16, anti-CD19, anti-CD11b, anti-CD38, anti-CD27, and anti-CD24 (Biolegend). The data were acquired using a Canto II cytometer (BD Biosciences) and analyzed using Flowjo. The gating strategy for phenotyping included initial gating of a live PBMC population followed by the CD3+CD4+ population. The expression of CD25, CD127, CD39, and CD73 were expressed as % of the CD3+CD4+ population.
T cell proliferation and suppression was determined by CFSE dye dilution of the responder cells. Analysis of CFSE distribution was performed on Flowjo Proliferation platform and data are represented by Replication Index (RI). RI, determines the fold-expansion of only the responding cells, and it is the average number of divisions that all cells have undergone after they had been stained by a cell proliferation dye (13 (link)). The percentage of suppression was calculated from proliferation and suppression values.
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9

Establishment of Murine Tumor Models

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To establish a tumor-bearing mouse model, B16F10 cells (murine melanoma, ATCC® CRL-6475™) and CT26 (murine colon carcinoma, ATCC® CRL-2638™) were implanted into 6-week-old male C57BL/6 and Balb/c mice, respectively. Briefly, 5 × 104 cells in 100 μL of serum-free culture medium were subcutaneously injected into each mouse. Solutions of PBS and OPGMN were administered OG before 2 weeks, before 1 week, 0 days, after 1 week, and after 2 weeks of cancer inoculation (n=5). To administer OG, mice were fasted for 6 hours before and 1 hour after administration with free access to water. Tumor volumes were calculated using the following equation: volume = 0.5 × L × W2, where “W” and “L” are the width and length of the tumor, respectively. For in vivo flow cytometry analysis, after 21 days of cancer inoculation, PBMCs were collected and stained with anti-CD3, anti-CD4, anti-CD8, anti-CD11b, anti-CD27, anti-CD44, anti-CD45, anti-CD56, anti-CD62L, anti-CD25, and anti-Foxp3 antibodies (Biolegend). A fixed number of cells (1 × 105, without live-dead marker) per sample was measured using a flow cytometer for CD3+CD8+ cells, CD44highCD62Llow TCM, CD4+CD25+Foxp3+ Tregs, and CD11b+CD27+ NK cells.
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10

Multiparameter Flow Cytometry Analysis of NK Cells

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The cells were incubated with Fc blockade reagent for 20 min at room temperature and stained with fluorochrome-conjugated antibodies in serum and sodium azide-containing buffer. Flow cytometry was performed as previously described (16 (link)). Antibodies in the present study were listed as follows: FITC anti-CD56 (Cat#362546, BioLegend, USA), PE anti-NKp30 (Cat#325208, BioLegend, USA), anti-CD56 (Cat#362508, BioLegend, USA), anti-NKp44 (Cat#325108, BioLegend, USA), anti-CD27 (Cat#356406, BioLegend, USA), PerCP-Cy5.5 anti-CD3 (Cat#317336, BioLegend, USA), anti-NKG2D (Cat#320818, BioLegend, USA), APC anti-NKp46 (Cat#331918, BioLegend, USA), anti-CD11b (Cat#301310, BioLegend, USA), anti-CXCR6 (Cat#356006, BioLegend, USA), anti-CD3 (Cat#317318, BioLegend, USA), PE-Cy7 anti-NKp46 (Cat#331916, BioLegend, USA), anti-CD3 (Cat#317334, BioLegend, USA), APC-Cy7 anti-CD3 (Cat#317342, BioLegend, USA), and anti-CD45 (Cat#304014, BioLegend, USA). FlowJo software was used for data analyzing (Tree Star, Inc., Ashland).
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