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65 protocols using sb431542

1

Isolation and Culture of Mouse γδT Cells

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Pure mouse γδT cells were sorted from mouse splenocytes or thymocytes by FACSAria Sorter with staining live+CD45+TCRγδ+ cells, and cultured in 96 round plate in the RPMI-1640 complete medium, supplemented with anti-CD3 (1 ug/mL; 145-2C11), IL-2 (10 ng/mL), with or without TGF-β1 (2 ng/mL, R&D Systems), and SB431542 (5 uM). TCRγδ+CD8αα+ IELs and TCRγδ+CD8αβ IELs were sorted from IELs by FACSAria Sorter with gating live+CD45+TCRγδ+CD8α+β or live+CD45+TCRγδ+CD8αβ specifically and cultured in RPMI-1640 complete medium supplemented with anti-CD3, IL-2 (100 U/mL), IL-3 (10 ng/mL), IL-4 (10 ng/mL), and IL-15 (10 ng/mL) as previously described in ref. 19 (link), treated with or without TGF-β1 (2 ng/mL, R&D Systems), or SB431542 (5 uM).
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2

Differentiation of mESCs to Lung Epithelium

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Nkx2-1mCherry mESCs (Bilodeau et al., 2014 (link)) were differentiated to lung epithelium based on our previously published protocol (Longmire et al., 2012 (link)). First, LIF was withdrawn for 60 hr to induce embryoid body (EB) formation. EBs were then treated with 100 ng/mL activin A (R&D Systems) for 60 hr. Anterior foregut endoderm was generated by dual BMP4 and TGFβ inhibition by SB431542 (10 μM) and rmNoggin (100 ng/mL, R&D Systems) for 24 hr. Lung specification was induced using rmWnt3a (100 ng/mL) and rmBMP4 (10 ng/mL). Cells were sorted on day 14 for Nkx2-1mCherry expression and replated for 2D culture outgrowth containing rhFGF2 (250 ng/mL) and rhFGF10 (100 ng/mL) as previously published (Kurmann et al., 2015 (link)) and rmWnt3a (100 ng/mL), as per experimental conditions. On day 16, cells were infected overnight with a SftpcGFP lentivirus (Longmire et al., 2012 (link)) containing a 3.7kb fragment of the human SPC promoter (generous gift of Dr. Jeffrey A. Whitsett, University of Cincinatti) cloned into the promoter of the pHAGE CMV-GFP-w lentiviral plasmid in the place of the CMV promoter (Wilson et al., 2010 (link)) in 5 ug/mL polybrene for quantification on day 30 of SftpcGFP+ cell induction.
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3

Neuronal Differentiation from iPSCs

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iPSCs were manually dissected from MEF, then grown in suspension culture for 4 days in EB medium supplemented with 2 μM dorsomorphin (R&D Systems, 3096; Minneapolis, MN, USA) and 5 μM SB431542 (R&D Systems, 1614). Medium was then changed to neural induction medium consisting of DMEM/F12, 1 × N2 supplement (Invitrogen, 17502-048), 1 × NEAA, 2 mM glutamax, 0.1 mM β-mercaptoethanol, 2 μM dorsomorphin, 5 μM SB431542 and 20 ng ml−1 FGF2 for an additional 3 days in suspension. Neurospheres were then planted on laminin (Sigma-Aldrich, L2020)-coated culture dishes for rosette formation. Rosettes were manually picked 2–3 times, dissociated in Accutase then re-plated on poly-D-ornithine-laminin-coated substrates for neuronal differentiation in medium composed of neural basal medium (Invitrogen, 21103–049), 1 × B27 supplement (Invitrogen, 17504–044), 1 mM glutamine, 1% NEAA and 1 × Penicillin/Streptomycin for an additional 4, 8 or 12 weeks. Medium was changed every other day. To determine whether dorsal–ventral fate could be respecified, cells were grown with the Smoothened agonist (Hedgehog pathway activator) purmorphamine (1 μm; Cayman Chemical, Ann Arbor, MI, USA, 10009634), or with the dorsalizing agent lithium chloride (LiCl; 1 mM; Sigma-Aldrich). Controls were exposed to DMSO (carrier) alone.42 (link),43 (link)
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4

Mesenchymal Differentiation of hEMPs

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To induce mesenchymal differentiation, hEMPs were seeded at 50,000 cells/well into 6-well tissue culture plates, pre-coated with Matrigel. Day 0–7 of differentiation, MesenCult Proliferation Kit, Human (STEMCELL Technologies) supplemented with SB-431542 (10 μM, R&D Systems) was used. Day 0–3, 10 μM Rock inhibitor (Y27632 hydrochloride; R&D Systems) and 10 μg/mL gentamicin (Gibco, Thermo Fisher Scientific, Waltham, MA) were also added. Day 7–14, medium was switched to EGM-2 (Lonza) supplemented with SB-431542 (10 μM). Day 14–18, cells were dissociated into single-cell suspension with Accutase (Innovative Cell Technologies, San Diego, CA), and analyzed or isolated by fluorescence-activated cell sorting (FACS) (see Supplemental Experimental Procedures).
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5

Directed Differentiation of iPSCs to DA Neurons

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Human iPSCs were cultured using standard protocol on inactivated mouse embryonic fibroblast. DA neuron differentiation was done as previously described (Kriks et al., 2011 (link)). Briefly, iPSCs were cultured on Matrigel (Corning)-coated plate at a density of 4×104 cells/cm2 in SRM media containing growth factors and small molecules including FGF8a (100ng/mL, R&D Systems), SHH C25II (100ng/mL, R&D Systems), LDN193189 (100nM, Stemgent), SB431542 (10μM, R&D Systems), CHIR99021 (3μM, Stemgent), and purmorphamine (2μM, Sigma) for the first five days. For the next six days, cells were maintained in Neurobasal medium (Gibco) containing B-27 supplement minus vitamin A (Gibco), N-2 supplement (Gibco) along with LDN193189 and CHIR99021. In the final stage, colonies were made into single cell suspension and seeded at density of 4×106 cells/cm2 on poly-ornithine and laminin coated plate in neurobasal media containing B27 minus vitamin A, BDNF (20ng/mL, Peprotech), GDNF (20ng/mL, Peprotech), TGFβ (1ng/mL, R&D Systems), ascorbic acid (0.2mM, Sigma), dibutyryl-cAMP (0.5mM, Sigma) and DAPT (10μM, Stemgent) until maturation. DA neurons were cultured for >60 differentiation days before measurements.
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6

Chondrocyte signaling pathway regulation

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Antler chondrocytes were isolated by enzymatic digestion as previously described20 and cultured with DMEM‐high glucose (Hyclone) supplemented with 10% foetal bovine serum (Life Technologies). These cultured chondrocytes were treated with recombinant human/mouse/rat TGFβ1 protein (rTGFβ1, 100 ng/mL; R&D Systems) in the absence or presence of TGFβ receptor inhibitor SB431542 (10 µmol/L, MCE), Smad3 inhibitor SIS3 (10 µmol/L; Selleck), Notch signalling inhibitor DAPT (25 µmol/L; Sigma), Smo antagonist cyclopamine (10 µmol/L; Tocris Bioscience) and Gli1 antagonist GANT58 (10 µmol/L; Tocris Bioscience), respectively. Additionally, chondrocytes were incubated with SB431542 or SIS3 and then supplemented recombinant human Shh protein (rShh, 25 ng/mL; R&D Systems).
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7

Endothelial Cell Enrichment and Lentiviral Transduction

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exECs were generated as previously described (Seandel et al., 2008 (link)). Briefly, CD45CD31+ cells were FACS purified and incubated with lentivirus containing either the E4ORF1 or myrAkt construct for 48 hours. Cell culture medium containing 20% FBS (SH30066.03, HyClone, GE Life Sciences), 10 mM HEPES (15630–080, Invitrogen), 1% Glutamax (35050061, Life Technologies), 1% Non-Essential Amino Acids (11140050, Life Technologies), 1% PenStrep (15240–062, Invitrogen), 50 ug/ml Heparin (H3149, Sigma), 50 ug/ml Endothelial Cell Supplement (02–102, Millipore-Sigma), 5 μM SB431542 (1614/10, R&D Systems), 20 ng/ml FGF (100–18B, Peprotech) and 10 ng/ml VEGF (450–32, Peprotech) at 37°C, 5% O2, 5% CO2 in a HERAcell 150i incubator (Thermo Fisher, USA).
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8

Fetal Thymus Development Regulation

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On embryonic day 15.5 (E15.5), fetal thymuses from C57BL/6 mice were removed and cultured on polycarbonate filters (pore size, 0.8 mm; Millipore, USA) in RPMI 1640 medium supplemented with 10% fetal bovine calf serum (HyClone, USA), 1% penicillin and streptomycin (HyClone), and 50 nM 2-mercaptoethanol (Sigma, USA) in the presence or absence of mouse IL-4 (10 ng/ml; PeproTech, USA) and/or TGF-β1 (15 ng/ml; Cell Signaling, USA). Where appropriate, 1 μM SB431542 (selective inhibitor of TGF-β type 1 receptor kinases) or 10 μg/ml neutralizing antibody to TGf-β (1D11; R&D Systems, USA) was added once in 2 days. After 7 days, the thymuses were harvested and single-cell suspensions were prepared and analyzed for their CD4, CD8, Foxp3, and CD103 expression levels by flow cytometry.
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9

Endothelial Cell Culture Protocol

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DMEM:Ham’s F-12 (Sigma, D6421) supplemented with 20% FBS (Omega Scientific, FB07), 20 mM HEPES (Invitrogen, 15630080), 100 µg ml−1 Heparin (Sigma, H3393), 50 µg ml−1 endothelial mitogen (Alfa Aeser J65416) and 5 µM SB431542 (R&D, 1614).
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10

Differentiation of iPSCs to Cardiomyocytes

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Cell reprogramming into iPSC lines was previously described by Rovina et al. [15 (link)]. Briefly, iPSCs were seeded in Matrigel (Corning, 356,230) coated 6 well plates in StemFlex medium (ThermoFisher, A3349401) supplemented with RevitaCell (ThermoFisher, A2644501). On Day 0, medium was replaced with BPEL medium and cells were treated with 6 mM CHIR99021 (Bertin bioreagent, 13,122), 100 µg/ml Activin A (MiltenyiBiotec, 130–115-008), and 100 µg/ml BMP4 (R&D Systems, 5020-BP). On Day 3, cells were treated with 10 mM XAV939 (R&D Systems,3748), 100 µg/ml BMP4 and 2 mM Retinoic acid (Sigma Aldrich, R2625). Medium is changed on Day6 with BPEL + 30 ng/ml BMP4 + 1 µM Retinoic acid. After 3 days, cells were replated on fibronectin coated plates with BPEL medium supplemented with 20 mM SB 431542 (R&D Systems,161).
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