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5 protocols using n1 acetylspermidine

1

Untargeted Metabolic Profiling of Urine

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Reagents for sample preparation and LC mobile phases (OptimaTM grade) were obtained from Thermo Fisher ScientificTM Inc. (Waltham, MA, USA). Authentic chemical standards were of the highest purity available: debrisoquine sulfate, 4-nitrobenzoic acid, carnitine, creatine, hippuric acid, 4-pyridoxic acid, phenylacetylglycine, 4-hydroxy-3-methoxyphenylglycol sulfate, 1-methylhistamine, 1-methylnicotinamide (Sigma-Aldrich® LLC, St. Louis, MO, USA), and N1-acetylspermidine (Cayman Chemical Company, Ann Arbor, MI, USA).
Urine samples were prepared as previously described [20 (link)]. Urine (20 μL) was deproteinated with 50% acetonitrile (80 μL) containing internal standards (2 μM debrisoquine sulfate, 30 μM 4-nitrobenzoic acid), incubated on ice for 10 min, vortexed for 30 s, and centrifuged for 10 min (10,000× g, 4 °C). A quality control (QC) sample was prepared by mixing 1 μL of urine from each sample and prepared as above and run every 10 samples.
Samples were injected (2 μL) and analyzed by an ACQUITY UPLC (BEH C18 1.7 μM, 2.1 × 50 mm column) coupled to a Xevo® G2 QTOF-MS (Waters Corp., Milford, MA, USA). Data-independent acquisition was performed in both negative and positive electrospray ionization (ESI) modes as previously described [6 (link)] using leucine enkephalin (556.2771 [M + H]+ or 554.2615 [M − H]) as Lockspray® to calibrate accurate mass.
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2

Metabolite Quantification for Biochemical Analysis

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Creatine (Sigma Aldrich, C0780), creatinine (Sigma Aldrich, 1052060050), taurine (Sigma Aldrich, T8691), guanidine acetate (Sigma Aldrich, 50,920), carnitine (Sigma Aldrich, C9500), 4-quinolinecarboxylic acid (Sigma Aldrich, 174823), quinoline-2,4-dicarboxilic acid (Sigma Aldrich, 8151030025), DL-2-aminoadipic acid (Sigma Aldrich, A0637), N1-acetylspermidine (Cayman Chemical 9001535), N-acetyl aspartic acid (Sigma Aldrich, 00920) were used.
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3

Quantifying Spermidine Derivatives in Biofluids

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For the sample extraction, methanol (J.T.Baker, Phillipsburg, NJ, USA, catalog no. 9822), methyl tert-butyl ether (Honeywell, Charlotte, NC, USA, catalog no. 34875), and water (VWR, Suwanee, GA, USA, catalog no. 83645.320) were used. The LC-MS-grade solvents for mobile phases included acetonitrile (Honeywell, catalog no. 34967) and water (VWR, catalog no. 83645.320). Mobile-phase modifiers such as ammonium formate (Supelco, Bellefonte, PA, USA, catalog no. 70221) and formic acid (VWR, catalog no. 84865.260) were also of LC-MS-grade quality. The deuterium oxide (catalog no. 617385) and D5-ammonium formate (catalog no. 795119) were from Merck, Rahway, NJ, USA. The D2-formic acid (catalog no. DLM-286-PK) was from Cambridge Isotope Laboratories, Tewksbury, MA, USA. The N1-acetylspermidine (catalog no. 9001535; InChI Key: MQTAVJHICJWXBR-UHFFFAOYSA-N) and N8-acetylspermidine (catalog no. 37434; InChI Key: FONIWJIDLJEJTL-UHFFFAOYSA-N) were from Cayman Chemical, Tallinn, Estonia.
The mouse and rat feces samples were from the Institute of Physiology of the Czech Academy of Sciences, Prague, Czech Republic. The human serum (catalog no. S7023-100ML), NIST SRM 1950 plasma (catalog no. NIST1950), and a mixture of 17 amino acids (catalog no. 79248) were from Merck.
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4

Comprehensive Analytical Protocols for Polyamine Modifications

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All basic chemicals were purchased at the highest available purity level from Sigma-Aldrich, Merck, ROTH, Acros Organics or Applichem. The substrates, enzymes and inhibitors used in the assays were obtained from the following suppliers: N-(5-aminopentyl) acetamide (acetylcadaverine) and N-(4-aminobutyl) acetamide (acetylputrescine) from TCI, N1-Acetylspermine from FLUKA, N1-Acetylspermidine and SAHA from Cayman Chemical Company,
Boc-K-(Tfa)-AMC and Boc-K-(Ac)-AMC from Bachem, citrate synthase, diamine oxidase and horseradish peroxidase type 1 from Sigma-Aldrich, trypsin from Applichem and the malatdehydrogenase from Calbiochem. SATFMK was synthesized according to [39 (link)]. PA0321, PA1409 and PA3774 were recombinantly produced as described before [30 (link)]. The acetyl-CoA synthetase was recombinantly expressed and purified according to Fierke et al. [31 (link)] using a plasmid that was kindly provided by the cited working group.
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5

Codon-Optimized AgmNAT Protein Expression

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The AgmNAT gene was codon optimized and synthesized by Genscript. Ambion RETROscript® Kit, ProBond™ nickel-chelating resin, and MicroPoly(A) PuristTM was purchased from Invitrogen. Oligonucleotides were purchased from Eurofins MWG Operon. PfuUltra High-Fidelity DNA polymerase was purchased from Agilent. BL21 (DE3) E.coli cells and pET-28a(+) vector were purchased from Novagen. NdeI, XhoI, Antarctic Phosphatase, and T4 DNA ligase were purchased from New England Biolabs. Kanamycin monosulfate and IPTG were purchased from Gold Biotechnology. Acyl-CoAs were purchased from Sigma-Aldrich. Cayman Chemical commercially synthesized N1-acetylspermidine. All other reagents were of the highest quality and purchased from either Sigma-Aldrich or Fisher Scientific.
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