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45 protocols using ov nc

1

Overexpression and Silencing of CTRP12 and KLF15 in H9c2 Cells

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CTRP12- or KLF15-specific pcDNA overexpression plasmids [overexpressed (Ov)-CTRP12 or Ov-KLF15] and the corresponding negative control (NC; Ov-NC), CTRP12-specific small interfering (si) RNA-CTRP12 (siRNA-CTRP12) and the corresponding NC (siRNA-NC), were synthesized by Shanghai GenePharma Co., Ltd. The following siRNA sequences were used: CTRP12 forward (F), 5′-CUGUGACGGUAGACAAGAAGA-3′ and reverse (R), 5′-UUCUUGUCUACCGUCACAGGG-3′; and siRNA-NC F, 5′-GAUCAUACGUGCGAUCAGA-3′ and R, 5′-UCUGAUCGCACGUAUGAUC-3′. H9c2 cells (1×105 cells/well) were transfected with the recombinants (1 µg) using Lipofectamine® 2000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's instructions for 6 h at room temperature. After 48 h cells underwent H/R injury.
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2

SMOC2 Overexpression and Knockdown Plasmids

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SMOC2 overexpression plasmid (ov-SMOC2) and negative control (ov-NC), SMOC2 interference plasmid (si-SMOC2) and negative control (si-NC) were purchased from Shanghai GenePharma Inc. (Shanghai, China). Lipofectamine 3000 (Invitrogen) was utilized for plasmid transfection. Si-NC sequences: sense 5'-UUCUCCGAACGUGUCACGUTT-3' and antisense 5'-ACGUGACACGUUCGGAGAATT-3'; si-SMOC2 sequences: sense 5'-GCGACAUGAACAAUGACAATT-3' and antisense 5'-UUGUCAUUGUUCAUGUCGCTT-3'.
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3

Modulating MALAT1 in Nucleus Pulposus Cells

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The lncRNA MALAT1 overexpression plasmid (OV-MALAT1) and negative control (OV-NC) were purchased from GenePharma (Shanghai, China). The following sequence of siRNA oligonucleotides (si-MALAT1) was used to knockdown MALAT1 expression: 5′-CACAGGGAAAGCGAGUGGUUGGUA-3′. The sequence of the noncoding control siRNA (si-NC) was 5′-UUCUCCGAACGUGUCACGU-3′. si-MALAT1, si-NC, mir-503 mimics, miR-503 inhibitor, and corresponding negative controls were purchased from RiboBio Co. (Guangzhou, China). Lipofectamine 2000 (Thermo Fisher Scientific, Waltham, USA) was used for transfection. Twenty-four hours before transfection, NP cells were seeded at 2 × 104 cells/well in a 96-well plate. Cells were transfected with OV-NC or OV-MALAT1 using Lipofectamine 2000. Twenty-four hours after transfection, cells were treated with 150 ng/mL IL-1β for 6 h. Forty-eight hours later, NPCs were used for the following experiments.
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4

Knockdown and Overexpression of PTP1B and KLF2 in HUVECs

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The short hairpin (sh)RNA targeting PTP1B (sh-PTP1B#1/2), KLF2 (sh-KLF2#1/2) and the corresponding sh-negative control (NC; sh-NC) were synthesized and inserted into the pRNA-U6.1 plasmid (GenScript) by GeneCopoeia, Inc. The sequences of shRNAs were as follows: sh-PTP1B#1, 5'-GCTACAGGTTCCTGTTCAA-3'; sh-PTP1B#2, 5'-GGTTCCTGTTCAACAGCAA-3'; sh-KLF2#1, 5'-GCACCGACGACGACCTCAA-3'; sh-KLF2#2, 5'-GAGTGGTAGCTTTCTACAA-3'; sh-NC, 5'-CCGGCAACAAGATGAAGAGCACCAACTC-3'.
A pcDNA3.1 overexpression vector (GenScript) encoding the full-length KLF2 (Ov-KLF2) and the corresponding NC (Ov-NC) were produced by Shanghai GenePharma Co., Ltd. In total, 100 nM recombinant vectors were transfected into HUVECs for 48 h using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol at 37˚C. The transfected HUVECs were then collected for subsequent experiments.
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5

HSPA4 Overexpression Vector Transfection

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HSPA4-specific pcDNA overexpression vector (Ov-HSPA4) and corresponding control including empty pcDNA (Ov-NC) were completed by Gene Pharma (Shanghai, China). These vectors were transfected into HCC1937 cells using Lipofectamine 2000 reagent (Invitrogen, USA) according to the manufacturer’s instructions. After 48 h transfection, cells were collected for subsequent experiments.
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6

Overexpression of RAGE in Primary Hepatocytes

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Plasmids carrying the RAGE gene [overexpression (Ov)-RAGE] and its corresponding negative control (Ov-NC) were constructed by GenePharma (Shanghai, China). The above-mentioned plasmids were transfected into primary hepatocytes using Lipofectamine 2000 (Invitrogen, CA, USA) for 24 h. After 24 h, the transfection efficacy was tested utilizing real-time quantitative polymerase chain reaction (RT-qPCR) and western blot.
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7

Silencing PTPRO and Overexpressing ERp44

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PTPRO small interfering RNA (siRNA-PTPRO) and the negative control (siRNA-NC) were constructed from GenePharma Company (Shanghai, China). The ERp44 overexpression plasmid (Ov-ERp44) was designed and synthesized by inserting ERp44 cDNA fragment into the pcDNA3.1 vector (GenePharma, Shanghai, China) and the empty pcDNA3.1 vector served as the negative control (Ov-NC). Cell transfection was performed using Lipofectamine 2000 (Invitrogen, CA, USA) according to the manufacturer’s instructions.
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8

Silencing TRIM22 and Overexpressing FOXC1 in RA-FLSs

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Small interfering RNAs (siRNAs/si) targeting TRIM22 (si-TRIM22#1/2; cat. no. siG000010346A-1-5/siG1072101848-1-5) were constructed by Guangzhou RiboBio Co., Ltd., with an siRNA negative control (NC; si-NC; non-targeting sequence; cat. no. siB06525141922-1-5). The pcDNA3.1 overexpression vector containing the FOXC1 gene (Ov-FOXC1) and NC overexpression vector (Ov-NC) were purchased from Shanghai GenePharma Co., Ltd. For TRIM22 silencing, RA-FLSs were transfected with 50 nM si-TRIM22#1/2 and si-NC. For FOXC1 overexpression, RA-FLSs were transfected with 2 µg Ov-FOXC1 and Ov-NC. Untransfected cells were regarded as the Control group. Lipofectamine® 3000 (Invitrogen; Thermo Fisher Scientific, Inc.) was used to transfect the plasmids into RA-FLSs, which were seeded in 6-well plates at a density of 1×106 for 48 h at 37°C according to the manufacturer's instructions. The cells were collected for subsequent experiments 48 h following transfection.
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9

Overexpression of FBXW7 and VEGF in SKOV3 Cells

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SKOV3 cells were seeded into 6-well plates at a density of 2x105 cells/well and cultured at 37˚C until they reached 80% confluence. pcDNA 3.1 containing FBXW7 (Ov-FBXW7) or VEGF (pc-VEGF), and the corresponding empty vectors used as negative controls (Ov-NC and pc-NC, respectively) were synthesized by Shanghai GenePharma Co., Ltd. SKOV3 cells were transfected with the respective plasmids (50 nM) using Lipofectamine® 2000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.) at 37˚C for 24 h, according to the manufacturer's instructions. Cells were collected and the transfection efficiency was assessed via reverse transcription-quantitative (RT-q) PCR and western blot analyses 24 h post-transfection.
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10

LEMD1 and SOX4 gene regulation

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HCT116 cells were seeded into 6-well plates at a density of 2 × 105 cells/well and cultured at 37°C until they reached 80% confluence. For targeted gene silencing, the specific short hairpin RNAs (shRNAs) targeting LEMD1 (sh-LEMD1#1/2) and the corresponding negative control (sh-NC) were generated by Sangon Biotech Company. Plasmids carrying SOX4 gene (Ov-SOX4) built for overexpression of SOX4 which regarded Ov-NC as the empty vector were provided by GenePharma (Shanghai, China). Cells were transfected with above plasmids employing Lipofectamine 2000 (Invitrogen, CA, USA) according to the manufacturer’s protocol. Cells were harvested 48 h later for subsequent experiments. The transfection efficiency of LEMD1 and SOX4 was examined using reverse transcription-quantitative PCR (RT-qPCR) and western blotting.
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