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12 protocols using licochalcone a

1

Licochalcone A and LM Compound Synthesis

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Licochalcone A was purchased from Sigma-Aldrich (St. Louis, MO, USA). In-house LM compounds LM-004, LM-006, LM-016, LM-026, and LM-031 were synthesized and characterized by NMR spectrum as described previously [43 (link)–45 (link)]. All compounds were soluble in a cell culture medium up to 100 μM.
Human TBP/Q79-green fluorescent protein (GFP) 293 and SH-SY5Y cells [42 (link)] were maintained in Dulbecco's modified Eagle's medium (DMEM) (for 293 cells) or DMEM-F12 (for SH-SY5Y cells) supplemented with 10% fetal bovine serum (FBS) (Invitrogen, Carlsbad, CA, USA), with 5 μg/mL blasticidin and 100 μg/mL hygromycin (InvivoGen, San Diego, CA, USA) added to the growth medium.
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2

In Vitro Licochalcone A Metabolism

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Licochalcone A (E-97%, Z-3% by NMR, Electronic Supplemental Material S1) and β-nicotinamide adenine dinucleotide phosphate, reduced sodium salt (NADPH), uridine 5’-diphosphoglucuronic acid triammonium salt (UDPGA), sulfatase, β-glucuronidase, sulfur trioxide-pyridine complex, and glutathione (GSH) were purchased from Sigma-Aldrich (St. Louis, MO). Pooled human liver microsomes (20 mg/mL, 150 men and women donors), cDNA-expressed human cytochrome P450 1A2, CYP2A6, CYP2B6, CYP2C8, CYP2C9, CYP2C18, CYP2C19, CYP2D6, CYP2E1, and CYP3A4 (0.5 nmol of P450 in 0.5 mL) and cDNA-expressed recombinant human UGTs including UGT1A1, UGT1A3, UGT1A4, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT1A10, UGT2B4, UGT2B7, UGT2B15, and UGT2B17 (5 mg protein/mL), were purchased from Corning Life Sciences (Tewksbury, MA). HPLC-grade solvents were purchased from Thermo Fisher (Pittsburgh, PA). Cryopreserved human hepatocytes (50 donors pooled) and manufacturer-specified cell culture media were purchased from Thermo Fisher (Waltham, MA).
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3

SARS-CoV-2 Spike Protein and Bioactive Compound Interactions

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Recombinant SARS-CoV-2 spike protein S1 (Figure 2) was obtained from RayBiotech (Peachtree Corners, GA, USA). The 23-mer SBP-1 peptide was purchased from LifeTein (Hillsborough, NJ, USA). The custom peptide TVFGLNVWKRYSK was synthesized by Pierce Custom Peptides (ThermoFisher; Rockford, IL). Licochalcone A, imatinib, mycophenolic acid, quinacrine, and HPLC-grade methanol and acetonitrile were purchased from Sigma Aldrich (St. Louis, MO, USA). LC-MS grade formic acid and rapid equilibrium dialysis single use plates were purchased from ThermoFisher (Waltham, MA, USA). Magnetic microbeads derivatized with Ni2+-nitrilotriacetic acid were obtained from EmerTher (Parsippany, NJ, USA). Polypropylene 2-mL conical bottom 96-well plates were purchased from Fisher Scientific (Hanover Park, IL, USA), and ultrapure water was prepared in house using a Milli-Q water purification system (Millipore, MA, USA). Extracts of Dioscorea villosa, Glycyrrhiza glabra, Glycyrrhiza inflata, Humulus lupulus, and Trifolium pratense L. were prepared, botanically authenticated and chemically standardized as previously described.11 (link),22 (link) For example, G. inflata roots were powdered, extracted by percolation with methanol (weight powder/volume of solvent, 1/20), and freeze dried (extraction yield 25% w/w, weight of extract/weight of root powder).22 (link)
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4

Licorice Compound Identification and Authentication

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All chemicals and reagents including HPLC-grade solvents were obtained from Fischer Scientific (Hanover Park, IL, USA). Licorice standards glycyrrhizin, glabridin, and licochalcone A were obtained from Sigma-Aldrich (St. Louis, MO, USA). Glycycoumarin was purchased from BioBioPha Co., Ltd. (Kunming Institute of Botany, China). For NMR acquisition, DMSO-d6 (99.9% D) was purchased from Cambridge Isotope Laboratories Inc. (Andover, MA, USA). The PCR-grade tubes, tips, and most biological reagents used for DNA authentication, including the DNeasy Plant mini kit, were acquired from Qiagen (Valencia, CA, USA) and/or Thermo-Fisher Scientific and Beckman Coulter (Indianapolis, IN, USA). The BeadBug microtube homogenizer was purchased from Benchmark Scientific, Inc. (Edison, NJ, USA). The bovine serum albumin, BSA, was obtained from New Englands Biolabs (Ipswich, MA, USA). Seakem LE agarose for gel electrophoresis was purchased from Lonza (Rockland, ME, USA). The Ambion RNase-free water was acquired from Life Technologies.
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5

Purification of Bioactive Chalcones

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2′-hydroxy-4,4′,6′-trimethoxychalcone (HCH) with ≥98% purity, cardamonin (CA) with ≥98% purity, xanthohumol from hop (Humulus lupulus) (XN) with ≥96% purity, isobavachalcone (IBC) with ≥98% purity and licochalcone A (LIC) with ≥96% purity were purchased from Sigma-Aldrich (Saint Louis, MO, USA). Methanol, ethanol, ethylene glycol, DMSO, acetonitrile, THF and n-hexane were of analytical grade.
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6

Chemical Reagents for Ion Channel Study

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Licochalcone A, TRAM-34, and PAP-1 were purchased from Sigma-Aldrich (St. Louis, MO, USA). IP3 was purchased from Merck Millipore (Billerica, MA, USA), and BTP2 was obtained from Tocris (Bristol, UK). All chemicals, except IP3, were dissolved in dimethyl sulfoxide, which was prepared in distilled water.
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7

EGFR Signaling Pathway Modulation in NSCLC

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The chemicals for molecular biology and buffer preparation, such as Tris, NaCl, SDS and licochalcone A (>98%), were obtained from Sigma. Osimertinib, PD98059 and MK2206 were purchased from Selleck Chemicals. Antibodies against ERK1/2 (#9102), p‐ERK1/2‐Thr202/Tyr204 (#4370EGFR (#4267), PARP (#9532), Akt (#4691), β‐actin (#3700), survivin (#2808), 4E‐BP1 (#9644)), p‐EGFR‐Tyr1068 (#3777), p‐Akt‐Ser473 (#4060), Bcl‐2 (#15071), cleaved caspase 3 (#9664), Bcl‐xL (#2764) and Mcl‐1 (#94296) were purchased from Cell Signaling Technology, Inc. Anti‐eIF4E (LS‑B12932) antibody was obtained from LifeSpan BioSciences, Inc. Human NSCLC cells, including H3255 (EGFR L858R), HCC827 (EGFR Del E746‐A750), H1975 (EGFR L858R/T790M) and A549 (EGFR WT), and immortalized lung epithelial or fibroblast cells, such as HBE, MRC5 and NL20, were obtained from American Type Culture Collection (ATCC, Manassas, VA). Cell culture was performed following the standard protocols provided by ATCC. All cells were authenticated and cytogenetically tested before being frozen. The foetal bovine serum (FBS) and cell culture medium were products of Thermo Fisher Scientific. The Ba/F3 cell was purchased form Cell Engineering Division/RIKEN BioResource Center and maintained according to the instructions provided.
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8

NSCLC Cell Line Cultivation and Analysis

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Human NSCLC cell line A549 and H460 were purchased from the Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences (Shanghai, China). The cells were routinely cultured in RPMI 1640 medium (Gibco, Eggenstein, Germany) containing 10% heat-inactivated fetalbovine serum (Gibco, Eggenstein, Germany), 100 units/mL penicillin, and 100 ug/mL streptomycin in a humidified cell incubator with an atmosphere of 5% CO2 at 37 °C. Antibodies including anti-MDM2 (sc-965, 1:200), anti-Cdc2 (sc-54, 1:200), anti-Cdc25C (sc-13138, 1:200) anti-Cyclin B1 (sc-245, 1:200), anti-Bcl-2 (sc-7382, 1:200), anti-Bcl-xL (sc-7382, 1:200), anti-cleaved PARP-1 (sc-56196, 1:200), anti-GAPDH (sc-293335, 1:1000), goat anti-mouse IgG-HRP and donkey anti-rabbit IgG-HRP were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies including anti-ATF4 (#11815, 1:1000), anti-p-EIF2α (#3398, 1:1000) and anti-EIF2α (#9722, 1:1000) were purchased from Cell Signaling Technology (Danvers, MA, USA).
MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide), Licochalcone A and DMSO (dimethyl sulfoxide) were purchased from Sigma (St. Louis, MO, USA); FITC Annexin V apoptosis Detection Kit I and PI (propidium iodide) were purchased from BD Pharmingen (Franklin Lakes, NJ, USA).
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9

Phytochemical Compounds Characterization

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Benzyl isothiocyanate (BI) and licochalcone-A (LICO) were obtained from Sigma-Aldrich. Chelidonine (CHE), evodiamine (EVO), isoliquiritigenin (ISO) and phenethyl isothiocyanate (PI) were obtained from Chromadex (Los Angeles, CA, USA). Salinomycin (SAL) was obtained from AdooQ Bioscience (Irvine, CA, USA). Glycogen Synthase Kinase-3 inhibitor X (GSK3i) was purchased from Calbiochem (San Diego, CA, USA). All phytochemicals were prepared by dissolving in dimethyl sulfoxide (DMSO, Sigma-Aldrich) at 10 mg/mL stock.
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10

Measuring COX-1 and COX-2 Enzymatic Activity

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COX enzymatic activity was measured using the arachidonic acid assay, as described previously [63 (link)]. For COX-1 activity, cells were plated in 24-well plates, and after 24 h, medium was removed and replaced with serum-free medium. Licochalcone A (0.1, 0.5, 1, and 2.5 μM) or the selective inhibitor of COX-1 SC560 [(1 μM); Sigma-Aldrich GmbH, Taufkirchen, Germany] were added and left for 15 min. Then, arachidonic acid (15 μM; Sigma-Aldrich GmbH, Taufkirchen, Germany) was applied for another 15 min. Finally, supernatants were collected and used for the determination of PGE2 as described above.
For COX-2 enzymatic activity, the assay was conducted as for COX-1, but with pre-incubation with LPS (10 ng/mL) for 24 h to induce COX-2 synthesis and using diclofenac sodium [(10 μM); Sigma-Aldrich GmbH, Taufkirchen, Germany] as commercial COX-2 preferential inhibitor.
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