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59 protocols using d trehalose dihydrate

1

Lyophilization of Mammalian Cells

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Three million cells were washed with PBS and resuspended in 0.5 ml of lyophilization solution which was 0.1 M D-(+)-Trehalose dihydrate (Sigma-Aldrich, cat. T9531) in PBS. Cell suspensions were placed in safe-lock polypropylene microcentrifuge tubes and were snap-frozen by immersing sideways in liquid nitrogen. Immediately before loading into the freeze dryer, the tubes were opened, and a film in which 7 holes were pierced (1 mm diameter each) was placed on top of the tube’s opening. The samples were loaded into a CoolSafe 110 freeze dryer (ScanVac, LaboGene, Denmark) belonging to the Proteomics Core Facility at the University of Debrecen, Hungary, which has a condenser temperature as low as –110° C and a vacuum pump capable of reaching an absolute pressure of 0.004 mBar. Samples were lyophilized for 6 hours (with the environmental temperature conditioned to 22° C) and were either processed immediately or stored for 2 weeks or 2 months at room temperature (23–25° C) in the presence of CaCl2 dihydrate (desiccant) in a non-transparent, tightly sealed box to prevent moisture absorption and light exposure.
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2

Phage Formulations for Long-Term Storage

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The phage used in this study was an N4-type, lytic podovirus, PEV2. It
was isolated from the sewage treatment plant in Olympia, WA, USA by students in
the Evergreen State College Phage Laboratory, who made a detailed analysis of
its infection-related properties and genome (Ceyssens et al., 2010 ). A PEV2 stock with a titer of 2.2 ×
109 pfu/ml stored in salt-magnesium buffer (SMB, 5.2 g/l sodium
chloride, 2 g/l magnesium sulfate, 6.35 g/l Tris-HCL, 1.18 g/l Tris base and
0.01% gelatin) was supplied via AmpliPhi Biosciences (AmpliPhi
Biosciences AU, NSW Australia) and used without further purification.
Various amounts of D-(+)-Trehalose dihydrate, mannitol and
L-leucine from Sigma–Aldrich (NSW, Australia) were co-spray dried with
phage to form a powder matrix to protect the phage particles. Table 1 shows the composition of the five
formulations prepared in the present study. The compositions of F2 and F3 were
the same as that prepared in our previous study (Leung et al., 2016 (link)). Their long term storage stability was assessed
in the present study.
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3

Detailed Analytical Chemistry Protocol

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All chemicals used throughout the study were of the highest quality. Methanol (>99.9% pure) was purchased from Fisher Chemical (Fair Lawn, NJ, USA). Dimethyl Sulfoxide-D6 (DMSO, >99.5% pure) was purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA, USA). For confirmation of sugars, d-mannitol (>98% pure), sucrose (>99.5% pure), d-(+)-raffinose pentahydrate (>98% pure), and d-(+)-trehalose dihydrate (>99.0% pure) were purchased from Sigma-Aldrich (St Louis, MO, USA. d-glucose (>99% pure) and inositol (>98%) were purchased from Cambridge Isotope Laboratories, Inc. and d-(-)-fructose (>98% pure) was purchased from BDH Analytical (Poole, UK). Ciceritol was isolated in-house (Briefly, a water extract of chickpeas was purified by reverse phase C18 HPLC, to afford ciceritol). Two phenolic compounds, (+)-catechin hydrate (98%) and (-)-epicatechin, were purchased from Sigma-Aldrich.
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4

Synthesizing and Characterizing Silver Nanoparticles

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Silver nanoparticles were prepared by a modified Lee-Meisel method.[56 ] 100 ml of HPLC grade water (Fisher Scientific) containing 18 mg of AgNO3 (silver nitrate) was brought to the boiling point, and 5 ml of 1% trisodium citrate (Sigma Aldrich) was added under constant stirring. Heating was continued for an h following which the solution was brought back to room temperature while still being stirred. The nanoparticles were characterized by absorbance and zeta potential measurements to determine their absorption maximum and surface charge (Figure S1). Transmission electron microscopy (TEM) was performed using carbon and formvar-coated 300 mesh copper grids (square mesh) to determine the size distribution. The imaging of the samples was done on a FEI Talos system at 200 mV. For the nanoparticle permeation assay, mucus samples were mixed with 5%, 10% and 15% D-(+)-trehalose dihydrate (Sigma Aldrich, 90210). Mucus samples treated with trehalose were kept at 37°C for 2 h before any measurements as well as prior to further exposure to silver and polystyrene nanoparticles (100 nm, obtained commercially from Sigma Aldrich). To study mucus-nanoparticle interactions, a constant 100 μg/ml concentration of nanoparticles was used.
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5

Primary Mouse Embryonic Fibroblast Autophagy

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Primary Mouse Embryonic Fibroblasts (MEFs) were prepared from CD-1 mice embryos of 17–18 days of gestation following standard procedure. The mice were obtained from the animal house at the Instituto de Fisiología Celular, UNAM, following IACUC guidelines (approved protocol CICUAL SCO51-18). Cells were grown in DMEM (10,569, Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (16,000, Gibco) and penicillin/streptomycin 100 U/mL (15,140, Gibco) in the presence of 5% of CO2 at 37 °C. The cells were incubated for 6 h with IP-1 peptide at different concentrations (0, 20, 30, 40 and 50 μM) prepared in DMEM. HEK2913T cells were seeded in 12-well plates (1 × 105 HEK293T cells per well) in 1 mL of supplemented DMEM (Invitrogen, Grand Island, NY, USA).
Iztli peptide 1 (IP-1, KFLNRFWHWLQLKPGQPMY) was synthesized and purified by Anaspec, Inc. (Fremont CA 94555, USA). The disaccharide D-(+)-Trehalose dihydrate (T0167-100G SIGMA-ALDRICH, St. Louis, MO, USA) was used as a positive control of autophagy induction at 100 mM for 5 h. Chloroquine was used at a final concentration of 40 µM for thirty minutes before treatment with IP-1 or trehalose. All reagents were diluted in water and used at indicated concentration in each experiment.
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6

Solubilized Nasal Drug Formulation

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MEL (4-hydroxy-2-methyl-n-(5-methyl-2-thiazolyl)-2 H-benzothiazine-3-carboxamide-1,1-dioxide) was applied as model drug and acquired from EGIS Plc. (Budapest, Hungary). Soluplus® (BASF GmbH, Hanover, Germany) was used as micelle-forming agent. Ethanol (Merck, Ltd., Budapest, Hungary) as organic solvent was used during our experiment. Microcrystalline sodium hydroxide (NaOH) as formulation excipient, chemicals for Simulated Nasal Electrolyte Solution (SNES) [16 (link)] which combined 8.77 g sodium chloride (NaCl), 2.98 g potassium chloride (KCl), 0.59 g and anhydrous calcium chloride (CaCl2) in 1000 mL of deionized water at pH 5.6 as well as disodium phosphate (Na2HPO4), monopotassium phosphate (KH2PO4) for pH 7.4 Phosphate-buffered saline (PBS) dissolution media and the cryoprotectant d-trehalose dihydrate were acquired from Sigma-Aldrich Co., Ltd. (Budapest, Hungary). Purified water for the experiments was filtered using the Millipore Milli-Q® (Merck, Ltd., Budapest, Hungary) 140 Gradient Water Purification System.
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7

Vesicular Stomatitis Virus-based Vaccine Vectors

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d-(+)-Trehalose dihydrate, d-mannitol, and dextran (Mr 40,000 kDa) were purchased from Sigma-Aldrich (Ontario, Canada). Recombinant Vesicular Stomatitis Virus-based vaccine vectors (VSVAg85A and VSVGFP) were produced in the vector facility of McMaster Immunology Research Centre as described previously1 (link). The vaccine vector is replication-competent containing the VSV wild-type glycoprotein.
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8

Nanoparticle Characterization and Storage

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For the final nanoparticle dispersion, an endotoxin quantification assay was performed with an Endosafe Nexgen-PTS device. No endotoxin was detected in all synthesized nanoparticles (<0.1 EU/mL). To calculate the number of nanoparticles per volume unit, the Ca2+ concentration was measured by AAS and then tentatively expressed as the most common calcium phosphate, i.e., hydroxyapatite, Ca10(PO4)6(OH)2. The nanoparticle concentration in 1 mL dispersion is calculated from the measured calcium phosphate concentration and the density of hydroxyapatite (3140 kg/m3) assuming a complete spherical morphology. Additionally, the number of Env units on the nanoparticle surface was determined by UV-Vis spectroscopy with an AlexaFluor®-488 labelled Env protein and UV microvolume spectroscopy (“Nanodrop”) (see [22 (link)] for typical calculation steps to obtain these data). For storage and transportation, the nanoparticle dispersion was lyophilized according to our previously reported protocol [23 (link)]. 20 mg D-(+)-trehalose dihydrate (Sigma-Aldrich Corp., St. Louis, MO, USA) were added to 1 mL of the nanoparticle dispersions as cryoprotectant followed by shock-freezing with liquid nitrogen and lyophilization for 72 h at 0.31 mBar and −10 °C. Immediately before the application, the nanoparticles were redispersed in 1 mL ultrapure water and gently sonicated with an ultrasonication bath.
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9

Influenza Vaccine Formulation in Bioneedles

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Bioneedles (15 mm long and 1 mm wide, internal volume of 5 μl) were obtained from the Bioneedles Technologies Group. Influenza A/PR/8/34 whole inactivated virus was produced by Intravacc. The process was based on egg virus propagation and β-propiolactone virus inactivation [12] (link). Split and subunit vaccines were produced by solubilization of WIV with n-octyl-β-D-glucopyranoside (Sigma-Aldrich) as described previously [8] (link). Virosome vaccine was produced as described previously [13] (link). All vaccines were concentrated with Centriprep centrifugal filters (Millipore) with a molecular weight cut-off (MWCO) of 10 kDa, and formulated in HBS (20 mM HEPES, 125 mM NaCl, 9 mM CaCl2, 5 mM MgCl2). Vaccine formulations for bioneedles contained 2.5% (w/w) D-trehalose dihydrate (Sigma-Aldrich) as a stabilizer. Influenza vaccine containing bioneedles (subunit, split, virosomal and WIV vaccine) were prepared by filling bioneedles with 5 μL of 1 mg/mL (HA content) liquid vaccines from the hollow back of the bioneedle using specially designed filling apparatus, and frozen on a metal plate at minus 50°C [11] (link). Next, bioneedles were freeze-dried using a Zirbus Sublimator 3×4×7 (Zirbus Technology). Lyophilized bioneedles were stored in glass vials with rubber stoppers under ambient air and relative humidity.
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10

Formulation and Characterization of Trivalent IPV

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Trivalent IPV, containing the inactivated Mahoney strain for type 1, MEF for type 2 and Saukett for type 3, was obtained from the process development department of Intravacc (Bilthoven, The Netherlands). The ten times concentrated trivalent bulk used in this study was determined at a nominal concentration of 400-80-320 DU/ml by ELISA as described (24 (link)).
The excipients sucrose, D-sorbitol, D-trehalose dihydrate, mannitol, L-glutamic monosodium salt monohydrate (MSG), glycine, myo-inositol, magnesiumchloride hexahydrate, lithium chloride and ovalbumin were all purchased from Sigma (St. Louis, MO). Peptone (vegetable) and dextran (6 kDa, from Leuconostoc ssp.) were from Fluka (Buchs, Switzerland) and sodium chloride was from Merck (Darmstadt, Germany). To prepare 10 mM McIlvaine buffer, 10 mM citric acid (Sigma-Aldrich, St. Louis, MO) was added to 10 mM disodium hydrogen phosphate dehydrate (Na2HPO4) (Fluka, Buchs, Switzerland) in a ratio of 1:6 resulting in a pH-value of 7.0. All excipients used were of reagent quality or higher grade.
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