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9 protocols using t jnk

1

Signaling Pathway Inhibition Assay

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Chemical inhibitors were purchased from Calbiochem (LY294002, PD98059, SB203580), Sigma (SP600125), and SelleckBiochem (A66, TGX-221, CAL-101, AS-252424, Ruxolitinib). The doses used and specific targets for each inhibitor are summarized in Table 1. Recombinant proteins were purchased from Austral Biological (IGF-1) and R&D Systems (IL-1β, OSM, IL-6, sIL-6R). Antibodies were purchased from Cell Signaling Technology (p-Akt S473, T-Akt, p-ERK T202/Y204, T-ERK, p-JNK T183/Y185, T-JNK, p-p38 T180/Y182, T-p38), Santa Cruz Biotechnology (p-STAT3 Y705, T-STAT3), and Abcam (MMP-13, MMP-2).
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2

Investigating Cytokine-Induced Signaling Pathways

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Human recombinant IL-1β was obtained from Biovision (Milpitas, CA). Baicalin was provided by Sigma (St. Louis, MO). Inhibitors of extracellular signal-regulated kinase (ERK; U0126), p38 (SB203580), and c-Jun N-terminal kinase (JNK; SP600125) were purchased from Calbiochem (Billerica, MA). Inhibitors of Akt (LY294002) and NF-κB (BAY-117082) were provided by Sigma. Antibodies against phospho-ERK (p-ERK), total-ERK (t-ERK), p-p38, t-p38, p-JNK, t-JNK, p-Akt, t-Akt, p-p50, p50, p-p65, p65, p-IκBα, IκBα, fibronectin, α-smooth muscle actin (α-SMA), and β-actin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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3

Recombinant human IL-27 Immunomodulation Protocol

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Recombinant human IL-27 was purchased from R&D Systems (Minneapolis, MN, USA). Lipopolysaccharide was obtained from Sigma (USA). IL-6, IFN-γ, and IL-1β ELISA kits were purchased from Elabscience (USA). Beta-actin antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). A mouse IL-27 antibody was obtained from Abcam (Cambridge, MA, USA). The human WSX-1 antibody was obtained from Bioss (Beijing, China). p-ERK, T-ERK, p-JNK, and T-JNK antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). The extracellular signal-regulated kinase (ERK) inhibitor (LY3214996) was purchased from MCE (USA). The concentration of DMSO was 0.1% (vol/vol) for all data subsets.
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4

Investigating Apoptosis Signaling Pathways

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LicA (BP0855) was purchased from Chengdu Biopurify Phytochemicals Ltd. (Chengdu, China). Primary antibodies against p-ERK, cleaved caspase-3, cleaved caspase-9, and cleaved poly (ADP-ribose) polymerase (PARP) were bought from Cell Signaling Technologies (Beverly, MA, USA). Primary antibodies against Bcl-2, Mcl-1, Bax, t-ERK, p-p38, t-p38, p-JNK, t-JNK, β-actin, and siRNA-p38 (sip38) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Moreover, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Z-VAD-FMK and tauroursodeoxycholic acid (TUDCA) were purchased from BioVision (Milpitas, CA, USA). BIRB 796 was bought from Tocris Bioscience (Minneapolis, MN, USA). Fetal bovine serum (FBS) was purchased from HyClone (Logan, UT, USA).
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5

Signaling Pathway Inhibition Assay

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Chemical inhibitors were purchased from Calbiochem (LY294002, PD98059, SB203580), Sigma (SP600125), and SelleckBiochem (A66, TGX-221, CAL-101, AS-252424, Ruxolitinib). The doses used and specific targets for each inhibitor are summarized in Table 1. Recombinant proteins were purchased from Austral Biological (IGF-1) and R&D Systems (IL-1β, OSM, IL-6, sIL-6R). Antibodies were purchased from Cell Signaling Technology (p-Akt S473, T-Akt, p-ERK T202/Y204, T-ERK, p-JNK T183/Y185, T-JNK, p-p38 T180/Y182, T-p38), Santa Cruz Biotechnology (p-STAT3 Y705, T-STAT3), and Abcam (MMP-13, MMP-2).
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6

Western Blot Analysis of Signaling Proteins

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Total cell lysates were prepared with protein lysis buffer (Intron Biotechnology, Seoul, Korea) supplemented with 1× protease inhibitor cocktails and PMSF (Sigma-Aldrich, St. Louis, MO, USA). The lysates were suspended with sample buffer containing sodium dodecyl sulfate (SDS) and boiled for 7 min for denaturation. Proteins were separated on 8% or 12% SDS-polyacrylamide gels electrophoresis, and then transferred onto a polyvinylidene fluoride (PVDF) membranes. The membrane was incubated with primary antibodies in Tris-buffered saline containing 0.1% Tween-20 (TBS-T) for overnight at 4 °C. Primary antibodies for p-ERK1/2, t-ERK1/2, p38, p-JNK, t-JNK, AKT, and β-actin were purchased from Santa Cruz biotechnology Inc. (Santa Cruz, CA, USA). p-p38 and p-AKT antibodies were obtained from (Cell Signaling Technology Inc., Danvers, MA, USA). The membrane washed with TBS-T to remove primary antibody, followed by incubation with specific secondary antibody (Jackson ImmunoResearch Laboratories Inc., West Grove, PA, USA) for 2 h. The signals were visualized using enhanced chemiluminescence (ECL; Abclon, Seoul, Korea) and an Image Quant LAS-4000 (Fujifilm Life science, Tokyo, Japan).
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7

Immunoblot Analysis of Liver Proteins

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Small pieces of liver tissues were lysed and ∼80 μg of proteins were used and analyzed by immunoblot. Antibodies against c-Jun (9165; CST), Acta-2 (M0851; Dako), Desmin (14026; Santa Cruz), Vimentin (5741; CST), TGF-β1 (130348; Santa Cruz), TNF-α (52746; Santa Cruz), Gapdh (25778; Santa Cruz), p-JNK (9255; CST), and t-JNK (7345; Santa Cruz) were used in this work. Multiple gels were run with the same set of lysates from each cohort of mice to be probed with the various antibodies, with one or two blots being used for assessment of loading using the anti-Gapdh antibody.
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8

Pra-B Dose-dependent Cellular Assays

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Pra-B (purity > 98%) was purchased from ChemFace (Hubei, China). The origin stock solution of Pra-B is 100 mM in DMSO solvent. The final DMSO concentrations ranged from 0.01% for 10 μM Pra-B to 0.05% for 50 μM Pra-B. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide (MTT) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies for CTSC, CTSV, t-ERK, p-JNK, t-JNK, p-p38, t-p38, p-MEK, t-MEK, p-EGFR, t-EGFR, and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The antibody for p-ERK was purchased from Cell Signaling Technology (Danvers, MA, USA).
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9

Quantitative Western Blot Analysis

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Total cellular protein was extracted using RIPA lysis buffer (Beyotime, Shanghai, China) supplemented with protease inhibitors (Roche) and quantified by BCA™ Protein Assay Kit (Pierce, Appleton, WI). The protein sample were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF, Millipore, Bedford, MA) membrane. Following 1 h of incubation in 5% skim milk at room temperature, the membranes were then incubated in the specific primary antibodies against Hsp27, Bax, Bcl-2, pro caspase-9, cleaved caspase-9, pro caspase-3, cleaved caspase-3, PARP, cleaved PARP, Cytochrome c, IL-1β, IL-6, TNF-α, MCP-1, p-IκBα, t-IκBα, p-p65, t-p65, p-JNK, t-JNK, p-c-Jun, t-c-Jun and GAPDH (all from Santa Cruz Biotechnology, Santa Cruz, CA) overnight at 4°C. The membranes were then incubated in the secondary antibodies (Santa Cruz Biotechnology) for 1 h at room temperature. Positive signal were developed by ECL Plus Western Blotting Substrate (Piece, Carlsbad, CA) and quantified by ImageJ 1.49 (National Institutes of Health, Bethesda, MD) [21] .
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