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5 protocols using atm pser 1981

1

Western Blot Analysis of DNA Damage Response

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Whole-cell protein lysates of treated cells were extracted and fractionated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and blotted onto nitrocellulose as previously described 14 (link). Protein expression was determined using the Western Lightning Plus-ECL detection system (NEL104001EA, PerkinElmer, MA, USA). Primary antibodies used: γ-H2AX (ab2893, abcam), activated caspase3 (ab32042, abcam), CHK2 pThr 68 (2661, Cell Signaling), CHK2 (3440, Cell Signaling), ATM pSer 1981 (5883, Cell Signaling) and GAPDH (MAB374, Millipore). Secondary antibodies used: anti-rabbit IgG, HRP-linked antibody (7074, Cell Signaling) and anti-mouse IgG, HRP-linked antibody (7076, Cell Signaling).
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2

Western Blot Analysis of DNA Damage Response

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Protein content was measured with BCA assay (Pierce), 5–30 µg was subjected to SDS/PAGE on 4–20% acrylamide gel (Thermo Scientific) followed by transfer to nitrocellulose membrane. When detecting ATM, 7.5% Tris-HCl gel (Bio-Rad) was used, and protein was transferred to PVDF membrane (Millipore) overnight at 30 V. Membranes were blocked with 5% milk in TBS-T (Tween 0.1% wt/vol), and probed with the following antibodies: p53 pSer15 (1∶1000, Cell Signaling), p53 (1∶1000, Cell Signaling), ATM pSer1981 (1∶1000, Cell Signaling), α-tubulin (1∶2000, Santa Cruz), ERK2 (1∶2000, Santa Cruz), dCK (Clone 9D4, 1∶1000, Millipore). Polyclonal rabbit antibody against dCK pSer74 was a gift from Dr. Francoise Bontemps (Universite Catholique de Louvain, Brussels, Belgium). ECL substrate (Millipore) was used for detection and development on GE/Amersham film. For separating nuclear and cytoplasmic lysates, NE-PER Extraction Reagents kit was used (Thermo Scientific).
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3

Immunoblot Analysis of Signaling Pathways

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Whole cell extracts were electrophoresed in 10% or 4-20% SDS-PAGE gels and blotted onto nitrocellulose membranes (BioRad). Antibodies against IRF3, IRF3pSer396, TBK1, TBK1pSer172, ATM, ATMpSer1981 (Cell Signaling Technology), BCL2L12 (clone E-13, Santa Cruz) and GAPDH (Sigma) and horseradish peroxidase-coupled second stage reagents were used (Thermo). Blots were exposed on X-ray film (Fuji); densitometry analysis was performed using ImageJ-1.46r.
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4

Protein Profiling by Western Blot

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Cell lysates, SDS-PAGE and Western blot were performed as described in [5 (link)]. Antibodies used were: ATM p-Ser1981 #13050, Chk2 p-Thr68 #2661, Chk2 #2662, Chk1 p-Ser345 #2341, Chk1 #2360, KAP1 #5868, cleaved caspase 3 (Asp175) #9661 (Cell Signaling Technology, Danvers, MA, USA), KAP1 p-Ser473 #644602 (Biolegend, San Diego, CA, USA), ATM #AF1655 (R&D Systems Bio-Techne, Minneapolis, MN, USA), vinculin #V9131, β-actin #A2066 (Millipore Sigma, Burlington, MA, USA). Detection was performed by exposure to standard X-ray films or by a CCD camera system (UVITEC, Cambridge, UK).
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5

Immunofluorescence Analysis of Cellular Markers

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Antibodies included fibrillarin 1∶1000 (Abcam ab18380 or ab5821), CENP-A 1∶500 (Abcam 13939 or Upstate 07-574), TRF2 1∶200 (Imgenex IMG-124A or Novus NB110-57130), Ki67 antigen 1∶500 (Novocastra Laboratories Ltd.), H2AX-p 1∶300 (Millipore 05-636 or Abcam ab2893), ATM-p Ser1981 1∶250 (Cell Signaling 5883), Chk2-p Thr68 1∶250 (Cell Signaling 2661), SMC2 1∶300 (Cell Signaling 5394), SMC4 1∶300 (Cell Signaling 5547), goat polyclonal to DDDDK (FLAG) tag 1∶500 (Abcam ab1257), UBF 1∶150 (Santa Cruz H-300), and anti-BrdU 1∶400 (Sigma clone BU-33). Primary antibodies were detected using anti-mouse, anti-rabbit, or anti-goat secondary antibodies conjugated to Alexa Fluor 488, 594, 647 (Molecular Probes), FITC, Cy3, or Cy5 (Jackson Immunoresearch, Inc.).
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