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Collagen 1

Manufactured by R&D Systems
Sourced in China, France, United States

Collagen I is a type of collagen protein produced by R&D Systems. Collagen I is a major structural component of the extracellular matrix and is found in various connective tissues, including skin, bone, and tendon.

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8 protocols using collagen 1

1

Quantifying Pulmonary Collagen Content

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Cold PBS containing proteinase inhibitor cocktail (Sigma-Aldrich; Merck KgaA, Darmstadt, Germany) was used to homogenize pulmonary tissues, and hydroxyproline content (Winching, Nanjing, China) and collagen I (R&D Systems, Inc., Minneapolis, MN) were examined according to the manufacturer’s instructions.
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2

Engineered Tissue Raft Generation

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The in vitro engineered tissue raft was generated as previously described with modifications [27 (link)]. Briefly, 24-mm tissue culture inserts for six-well plates (Transwell Permeable Supports, Corning) were coated with 60% of bovine collagen I (Organogenesis) in DMEM / 10% FBS as an acellular layer in the bottom followed by incubation at 37°C for 1 hr for solidification. The cellular layer was prepared by mixing of 1 × 106 SKPs, 2 × 105 human foreskin fibroblasts, and nerve tissues as described in DMEM with 10% FBS, 75% collagen I, 50 ng/ml heregulin (R&D Systems), and 5 μM forskolin (Sigma). Nerve tissues (DRG and sciatic nerve) were freshly isolated from adult Nf1+/− mice, dissect into small pieces, and then added into the cellular layer mixture. The cellular layer was layered on top of acellular layer and incubated at 37°C for 1 hr for solidification. The rafts were kept submerged in regularly refreshed DMEM medium with 10% FBS. Two to five months later, tissue rafts were harvested and subjected to for histological and immunohistochemical analysis.
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3

Transwell Migration Assay for HUVEC Cells

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A 24-well Transwell chamber (Greiner Bio-One, Dutscher, France) with an 8-μm pore PET membrane was used to perform the migration assay and coated with collagen I (R&D System) at 10 µg/ml. The lower chamber was filled with 600 µl RPMI 1640 B16F1 or B16F10 conditioned medium (made from B16F1 or B16F10 control and Phenacetinum 4CH-treated cell line). Then, 5 × 105 HUVEC cells suspension were added into the insert. The cells were allowed to migrate at 37°C with 5% CO2 over 18 h. The inserts were washed in PBS and fixed with methanol for 15 min. Non-migrating cells were removed from the upper surface of the inserts by gently scrubbing with a cotton-tipped swab. Each PET membrane was cut and stained with mounting medium DAPI (ProLong Gold DAPI, ThermoFischer), between blades and slats. For counting, 10 pictures were taken per membrane, and each condition was made in duplicate. Experiments were performed in triplicate.
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4

First Trimester Placental Explant Culture

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First trimester placenta collections were approved by the AMC Biobank review committee, and were obtained at the time of elective terminations of pregnancy. Informed consent was obtained from each patient. Small fragments of placental villi from 5 to 12 weeks gestation were dissected from the placenta and placed in culture plate wells coated with collagen I (R&D systems). Placental villous explants were cultured for a maximum of 5 days at 5% O2 and 37 °C in serum free DMEM/F12 media supplemented with pen-strep. Images of the explants were taken daily to monitor changes in outgrowth. At day 4 or 5 explants were fixed in 4% PFA and processed for immunohistochemistry.
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5

Immunohistochemical Analysis of IL-17, Collagen I, and Collagen III

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The heart samples were fixed by 4% paraformaldehyde followed by embeddedness in paraffin. Sections were stained with primary antibody against IL-17 (1:200) (Cell Signaling Technology, MA, United States), collagen I and collagen III (1:200) (R&D Systems, Minneapolis, MN, United States) overnight at 4°C, respectively. After washing three times with phosphate buffered saline (PBS), the sections were incubated with corresponding secondary antibody at room temperature for 1 h. Diaminobenzidine and neutral gum were used to stain sections. Images were captured by fluorescence microscopy (Nikon 80i, Otawara, Tochigi, Japan). The resulting figures were then processed by Image-Pro Plus 6.0 to quantify the data.
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6

Placental villous explant culture

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Human first trimester placenta specimens (n = 12) were obtained from the HIS Mouse Facility of the Amsterdam UMC, location AMC, Amsterdam. All material has been collected from donors at the time of elective terminations of pregnancy from whom a written informed consent for the use of the material for research purposes had been obtained by the Bloemenhove clinic. Small fragments (15–20 mg wet weight) of placental villi from 5 to 12 weeks gestation were dissected from the placenta and placed in 48 well culture plates coated with 3 mg/ml collagen I (R&D systems). Transfection was done 24 h later with 80 pmol PCBP1, PCBP2, or YBX1 siRNAs (Qiagen, Germany, Flexitube Genesolution, a package of four preselected siRNAs targeting the different genes) or non-targeting siRNAs (Qiagen) using 2.5 μl XtremeGENE HP transfection reagent (Sigma) in a total volume of 250 μl. Placental villous explants were cultured for a maximum of 5 days at 5% O2 and 37 °C in serum free DMEM/F12 media supplemented with pen/strep. Images of the explants were taken on a Leica microscope daily to monitor changes in outgrowth. At day 4 or 5 explants were fixed in 4% PFA and embedded for immunohistochemistry.
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7

Tuning LbL Film Mechanics via pH

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For initial
experiments, LbL-assembled films of poly(allylamine hydrochloride)
(PAH) and poly(acrylic acid) (PAA) were assembled on glass slides
as previously described, adjusting the pH to control the mechanical
stiffness as defined by E.17 (link) Because the average layer thickness is inversely proportional to
pH, films built from polymer solutions of pH 2.0 and 4.0 went through
a total of 11 and 15 dipping cycles, respectively, in order to maintain
a constant film thickness.8 (link) To complete
one LbL assembly cycle, glass slides were dipped into a 10 mM solution
of PAH for 30 min, followed by three rinse–bath dippings for
2, 1, and 1 min in DI H2O and then were dipped into a 10
mM solution of PAA for 30 min, followed by the same three-bath rinse.
The films were then coated with solutions of 100 μg/mL collagen
I (BD Biosciences) or 100 μg/mL collagen I and 25 μg/mL
lumican (R&D Systems, Inc.) for 2 to 3 h at 37 °C. LbL assemblies
are typically described by the cation/anion pair and total number
of bilayers For example, (PAH/PAA)n indicates
an assembly of n bilayers composed of one layer of
PAH followed by one layer of PAA.
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8

Characterizing Stemness in Extracellular Matrix

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We coated 96-well plates overnight at 4 °C with recombinant Npnt (5 μg/ml, R&D Systems), collagen I (10 μg/ml, Nippi), collagen IV (10 μg/ml, Nippi), laminin I (10 μg/ml, Nippi), and fibronectin (10 μg/ml, Nippi), then they were washed with PBS and blocked with 3% bovine serum albumin for 1 hour at 37 °C. M3H1 cells were then plated at a concentration of 2 × 104 cells/well and cultured for 48 hours. Sox2+ cells were determined by immunohistochemistry using an anti-Sox2 antibody. Total cells were counted using DAPI, then the ratio of Sox2+ cells was determined under a fluorescence microscope.
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