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5 protocols using mouse igg isotype control

1

Comprehensive Immunoblotting Protocol

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The following reagents and antibodies were used in this study:
MG132 (Sigma-Aldrich, Cat#M7449); anti-Flag (Sigma-Aldrich, Cat#F7425); anti-MYC (Sigma-Aldrich, Cat#M4439); anti-STAT3 (Cell Signaling Technology, Cat#9319S); anti-phospho-STAT3 (Cell Signaling Technology, Cat#9145S).
Mouse IgG Isotype control (Cell Signaling Technology, Cat#53484).
Rabbit IgG Isotype control (Cell Signaling Technology, Cat#2729); anti-Usp21 (Invitrogen, Cat#PA5-110556); anti-beta actin (2D4H5) (Proteintech, Cat#66 009-1-Ig).
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2

Antibody Characterization for Chromatin Immunoprecipitation

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Antibodies used were as follows: ICN1 (Cell Signaling Technology, 2421), Rbpj (5313, Cell Signaling Technology), FLAG (F1804, Sigma), HA (3725, Cell Signaling Technology), β-actin (A5316, Sigma), MYC (D84C2; Cell Signaling Technology), and ZMIZ1 (AP6236a, Abgent). Antibodies for ChIP-Seq are as follows: H3K4me3 (Millipore, 07-473); H3K4me1 (Abcam, ab8895); H3K27me3 (Millipore #07-449); H3K27ac (Abcam, ab4729); HA (Abcam, ab9110, 2.5ug); mouse IgG isotype control (Cell Signaling Technology, 5315s); rabbit IgG isotype control (Cell Signaling Technology, 2729); Rbpj (Cell Signaling Technology, 5313); ICN1 (Cell Signaling Technology, 4147s).
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3

Immunoprecipitation and Immunoblotting Protocol

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LNCaP cells were lysed with IGEPAL CA-630 buffer (50 mM Tris-HCl, pH 7.4, (Sigma, T5030), 1% IGEPAL CA-630 (Sigma, I8896), 10 mM EDTA, 150 mM NaCl, 50 mM NaF, 1 μM leupeptin (Sigma, L5793), and 0.1 μM aprotinin (Sigma, SRE0050)). Primary antibody was covalently immobilized on protein A/G agarose using the Pierce Crosslink Immunoprecipitation Kit according to the manufacturer’s instructions (Thermo Scientific, 26147). Samples were incubated with immobilized antibody beads for at least 2 h at 4 °C. Cell lysates were also subjected to immunoprecipitation with either mouse IgG isotype control (Cell Signaling Technology, 5415) or rabbit IgG isotype control (Cell Signaling Technology, 3900), depending on the immunoglobulin type of primary antibody. After immunoprecipitation, the samples were washed with TBS five times. They were then eluted with glycine-HCl (0.1 M, pH 3.5) and the immunoprecipitates were subjected to immunoblotting using specific primary antibodies.
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4

Investigating TXNDC5 and TGFBR1 Interactions

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Human WT TXNDC5, HA-tagged mutant TXNDC5-AAA and human TGFBR1-Myc-Flag-tagged mRNA were transfected into NIH-3T3 fibroblasts using Lipofectamine MessengerMAX (Thermo Fisher Scientific, MA, USA) for 4 h according to manufacturer’s instructions. Protein lysates from NIH-3T3 were incubated with mouse anti-Flag tag monoclonal antibody (Cell Signaling Technology, MA,USA, #8146) or mouse IgG isotype control (Cell Signaling Technology, MA,USA, #5415 S) with protein G magnetic beads and collected with a magnetic stand. IP of WT or mutant TXNDC5 was conducted using a magnetic IP kit (Thermo Fisher Scientific, MA, USA). Proteins co-immunoprecipitated with Flag-tag, TXNDC5, or HA were eluted and subjected to gel electrophoresis and immunoblotting using the antibodies described above.
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5

Immunoprecipitation and Immunoblotting of MCF7 Cells

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MCF7 cells were lysed with IGEPAL CA-630 buffer: 50 mM Tris-HCl, pH 7.4, (Sigma, T5030), 1% IGEPAL CA-630 (Sigma, I8896), 10 mM EDTA, 150 mM NaCl, 50 mM NaF, 1 µM leupeptin (Sigma, L5793), 0.1 µM aprotinin (Sigma, SRE0050). Primary antibody was covalently immobilized on protein A/G agarose using the Pierce Crosslink Immunoprecipitation Kit (Thermo Scienti c, 26147). Samples were incubated with immobilized antibody beads for at least 2 h at 4°C. Cell lysates were also subjected to immunoprecipitation with either mouse IgG isotype control (Cell Signaling Technology, 5415) or rabbit IgG isotype control (Cell Signaling Technology, 3900) according to the immunoglobulin type of the primary antibody. After immunoprecipitation, the samples were washed with PBS for 5 times. They were then eluted with glycine-HCl (0.1 M, pH 3.5) and the immunoprecipitates were then subjected to immunoblotting using speci c primary antibodies described in the Western blot part.
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