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16 protocols using rgd peptide

1

Peptide Synthesis and Inhibitor Preparation

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The peptide SLIGKV (PAR2-AP), FSLLRY(PAR2-ANT) and VKGILS (PAR2 AP control peptide) were purchased from Tocris Biotechne. The MAPK p38 inhibitor SB203580 was purchased from Santacruz and was prepared in ethanol as directed by the manufacturer. RGD peptide (Sigma Aldrich) was dissolved in deionized water as directed by manufacturer.
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2

Blastocyst Adhesion Assay with Osteopontin

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The 96-well plates were pre-coated with fibronectin (FN, 1 mg/mL, Sigma) at 37°C and 5% CO2 for 2 h. The 25 hatched blastocysts were seeded into each well in 50 µl of single step medium with 10.0 µg/mL of rOPN, 1.00 µg/mL of anti-OPN antibody or 0.50 mg/mL of RGD peptide (Sigma), and BSA was used for the controls. Twenty-four hours later, the adhesion rate of the blastocysts was examined by three independent persons, and the experiments were repeated three times.
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3

Cell Culture and Microscopy Techniques

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The MCDB 131 medium, foetal bovine serum, penicillin, streptomycin, fungizone, L-glutamine were purchased from GIBCO (Grand Island, NY, USA). Epidermal growth factor was from Invitrogen (Nalge Nunc International, Rochester, NY, USA). The 96 well microtiter plates and the 8 wells LabTek® Chamber Slide™ from Nalge Nunc International (Rochester, NY, USA). Lysine-sepharose was purchased from Health Care (Piscataway, NJ, USA). Bovine thrombin and RGD peptide were from Sigma (St Louis, MO. USA). The dyes di-8-anepps and Alexa 488 were from Molecular Probes (Eugene, OR, USA). FluoSpheres size kit # 1 carboxylate modified microspheres red fluorescent was from Molecular Probes (Eugene, OR, USA). The uPA and PAI-1 ELISA kits were purchased from American Diagnostica (Greenwich, Connecticut, USA).
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4

Integrin-mediated Cytoskeletal Regulation

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RGD peptide, Fibronectin, lipopolysaccharide (Escherichia coli 0111:B4), Cytochalasin B, Rhodamine-conjugated phalloidin and proteasome inhibitor MG132 were obtained from Sigma-Aldrich (Shanghai, China). NSC23766 was the product of Selleck Chemicals (Shanghai, China). Rabbit monoclonal antibodies for HMGN2 was from Cell Signaling Technology Inc. (Danvers, USA). Mouse monoclonal antibody for F-actin and Rabbit monoclonal antibodies for integrin α5, integrin β1 were purchased from Abcam (Cambridge, USA). Mouse and rabbit monoclonal antibodies for GAPDH, horseradish peroxidase (HRP)-conjugated secondary antibody and FITC fluorescent-labeled secondary antibody (goat anti-rabbit IgG, green) were provided by Beyotime Institute of Biotechnology (Haimen, China). Rabbit polyclonal antibody for NFI was provided by Santa Cruz Biotechnology Inc. (Santa Cruz, CA). Rac1 activation assay kit with anti-active Rac1 (Rac1-GTP) monoclonal antibody and anti-Rac1 rabbit polyclonal antibody were provided by NewEast Biosciences (Malvern, USA).
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5

Astrocyte Culturing and Modulation

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Astrocytes were collected from subcultures and 2×103 cells/well were seeded to 96 well plates (MTS assay) or 1×104 cells/well in 6 well plates in DMEM/F-12 with 10% FCS. At confluence, before treatment cells were starved for 24 h in serum-free DMEM/F-12. Then medium was changed to serum-free DMEM/F-12 containing one or more of the fowling substances: 1 ng/ml active TGF-β2 (R&D Systems, 302-B2-010/CF), 250, 1000 or 2000 ng/ml human recombinant OPN (R&D Systems, 1433-OP-050/CF), 100 nM RGD peptide (Sigma, A8052), or an anti-CD44 blocking antibody (1∶100, Abcam, ab41478). In each experiment, control cultures were incubated with the solvent in serum-free medium alone.
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6

AFM-based RGD-Integrin Binding Measurement

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For AFM based RGD-integrin binding measurements, cells were cultured on stiff PA gels in the absence (i.e., DMSO only) and presence of GM6001 for 12–15 hrs duration. Spherical probes (67 kHz, Novascan), 4.5 μm in diameter were coated with 10 μg/ml solution of poly-L-lysine (Sigma, Cat # P4707) for 20 mins and then treated with 0.5% glutaraldehyde (Sigma, Cat # G7651) for 20 mins19 (link). Next, probes were dipped in 0.1 mg/ml solution of RGD peptide (Sigma, Cat # G4391) for 30 mins, washed 3–4 times in distilled H2O, and then dried in a vaccum dessicator for 30 mins. After tip calibration using thermal noise method, RGD-integrin binding studies were performed. While indenting, probe was held at the cell surface for 10 secs to allow formation of integrin-RGD bonds, and then retracted at a tip speed of 3–4 μm/sec. Analysis of maximum adhesion force was performed using Igor Pro 6.22 A software.
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7

Proteinase K and Inhibitory Peptide Treatment of Placental EVs

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For proteinase K treatment, placental EVs were treated with 10 μg/ml proteinase K in PBS; for controls, proteinase K was added to PBS alone. Samples and controls were incubated for 10 min at 37 °C before heat inactivation at 65 °C for 10 min followed by addition of 100 μM phenylmethylsulfonyl fluoride (PMSF) protease inhibitor.
For inhibitory peptide experiments, RGD peptide was purchased from Sigma-Aldrich and HYD-1 (KIKMVISWKG) was synthesized (Genscript, Piscataway, NJ). All reagents were 95% or greater purity and resuspended in deionized water, aliquoted, and frozen. Labeled pEVs were incubated with 0.6 μM of inhibitory peptide and incubated at 37 °C for 30 min before intravenous administration into recipient mice.
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8

Formulation of RGD Peptide Hydrogel

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A total of 10 mg of RGD® peptide (Sigma Aldrich, A-8052, Darmstadt, Germany) was soaked in 11.5 ml distilled water, remaining under a magnetic stirrer after being dissolved. Then, 50 mg of Carbopol® was added and stirred. TEA drops were added until the needed viscosity was approximately reached (40,000–60,000 mPa-s).18
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9

Covalent Grafting of Alginate with RGD Peptide

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Ultrapure sodium alginate (PRONOVA UP LVG, Novamatrix, FMC Biopolymers) was covalently grafted with the cell-adhesion peptide (glycine)4-arginine-glycine-aspartic acid-serine-proline (hereafter abbreviated as RGD) using aqueous carbodiimide chemistry as previously described61 (link). Briefly, alginate solutions (1 wt.%) in MES buffer (0.1 M MES, 0.3 M NaCl, pH 6.5) were prepared and stirred overnight (ON) at room temperature (RT). N-Hydroxy-sulfosuccinimide (Sulfo-NHS, Pierce) and 1-ethyl-(dimethylaminopropyl)-carbodiimide (EDC, Sigma, 27.4 mg per g of alginate) were sequentially added at a molar ratio of 1:2, followed by 100 mg of RGD peptide (Genscript) per g of alginate. After stirring for 20 h at RT, the reaction was quenched with hydroxylamine (Sigma) and the solution was dialyzed against deionized water for 3 days (MWCO 3500). After purification with charcoal, RGD-alginate was lyophilized and stored at −20 °C until further use. The reaction yield was calculated using the BCA Protein Assay (Pierce), as previously described in62 (link).
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10

Inhibition of Rho Kinase and FAK in Cell Signaling

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The ROCK inhibitors Y-27632 (Rho Kinase inhibitor VI) and H-1152 were obtained from EMD Millipore (Billerica, MA, USA); Q-VD-OPh from MP Biomedicals (Eschwege, Germany); and GT from AppliChem (Darmstadt, Germany). The CNFy toxin (150 ng/ml) from Yersinia pseudotuberculosis and the C2I/C3 fusion toxin (Clostridium botulinum and Clostridium Limosum, respectively) combined with the C2II toxin from Clostridium botulinum (collectively termed C3 toxin) was produced and purified as described33 (link),34 (link). C3 toxin is a binary toxin consisting of C2II (200 ng/ml) and C2I/C3 (100 ng/ml) mixed in cell culture media. The FAK inhibitor 14 (FAK14) was purchased from Tocris (Bristol, UK), and Cilengitide, a cyclic pentapeptide RGD compound (cyclo-[RGDfN(Me)V])46 (link), the RGD peptide, DTT and iodocetamide were from Sigma (Taufkirchen, Germany).
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