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Scrambled control sirna

Manufactured by Horizon Discovery
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Scrambled control siRNA is a non-targeting small interfering RNA (siRNA) that does not have complementarity to any known human, mouse, or rat gene. It is designed to serve as a negative control for siRNA-mediated gene silencing experiments.

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52 protocols using scrambled control sirna

1

TGF-β2 Regulation of A20 Expression

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Fibroblasts were transfected with target-specific small interfering RNAs (siRNAs) (10 nM) coding for A20 or scrambled control siRNA (Dharmacon, Lafayette, CO, USA). At 24 h following transfection, fresh media containing TGF-ß2 (10 ng/ml) were added to the cultures, and incubations continued for a further 24 h, when total RNA was isolated for analysis.
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2

Evaluating Intercellular Adhesion in KCs

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Electroporation of human foreskin KCs was performed using 50 nm siRNA targeting desmoplakin (DP) (Life Technologies, Grand Island, NY), SVEP1 (Dharmacon, Lafayette, CO), or a scrambled control siRNA (Dharmacon, Lafayette, CO). DP was used as a positive control for decreased intercellular adhesion. Seventy-two hours following siRNA transfection, cell monolayers were seeded in triplicate into 6-well plates. Twenty-four hours after reaching confluency, cultures were washed twice in Dulbecco’s PBS (DPBS) and then incubated in 2 ml of dispase (2.4 U/ml; Roche Diagnostics GmbH, Indianapolis, IN) for 30 min (21 (link), 22 (link)). Released monolayers were subjected to mechanical stress to induce fragmentation. Fragments were counted using a dissecting microscope (MZ6; Leica, Buffalo Grove, IL).
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3

RNA Interference in Mouse Cells

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For RNA interference experiments, cells were transfected with a scrambled control siRNA (Dharmacon) or ON-TARGETplus SMARTpool siRNA (Dharmacon) against mouse Stat1 (50 nM) with the X-tremeGENE HP DNATransfection Reagent (Roche). Twenty-four hours later, the cells were stimulated with the appropriate PAMPs.
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4

Knockdown of AS160 and HSL in 3T3F442A Adipocytes

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AS160 siRNA (mouse Tbc1d4 siRNA) was purchased from Santa Cruz. HSL siRNA (Lipe smart pool mouse siRNA) and scrambled control siRNA were obtained from Dharmacon. On day 0, 3T3F442A cells were transfected with siRNA using Lipofectamine RNAiMAX (Thermo Fisher Scientific) by following the manufacturer’s instructions. Four hr later, cells were changed to differentiation media. On day 5, differentiated 3T3F442A adipocytes were used for further experiments.
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5

Keratinocyte-Secreted Factors Modulate Fibroblast Signaling

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The effect of keratinocyte-conditioned media (CM) on TGFβ1 and CTGF expression in normal human dermal fibroblasts (NHDF) was performed as follows. In cases where CM was collected from transfected cells, conditioned media was collected from transfected keratinocytes 24 hours after transfection with FOXO1 siRNA or scrambled control siRNA (Dharmacon) using GenMute siRNA Transfection Reagent (SignaGen Labs). Cells were incubated with 5–10 nM siRNA with transfection reagent for six hours and transferred to standard medium for 16 hours. Cells were transferred to fresh media for the collection of conditioned media. To assess the impact of conditioned media on fibroblasts or human bone marrow-derived mesenchymal stem cells (hBMSCs) the conditioned media was diluted 1:1 with α-MEM medium supplemented with 1% FBS. Therefore, the fibroblasts were incubated in low-serum (total 0.5% FBS) when stimulated with keratinocyte conditioned media. For antibody neutralization studies, anti-TGFβ139 (link) (10 μg/ml, R&D Systems) or anti-CTGF40 (link) blocking antibody (10 μg/ml, Santa Cruz) was added 1 hour prior to incubation of keratinocyte-conditioned media with NHDF or hBMSCs for 3 days.
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6

Cell Cycle Regulation via RNAi

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SMARTpool ON-TARGET plus siRNAs targeting CycA2, CDK1, CDK2, p21 or p53 as well as a scrambled control siRNA were purchased from Dharmacon and used at a concentration of 20 nM using HiPerFect transfection reagent (QIAGEN) and OptiMEM (Invitrogen) at 48 and 24 h before live-cell imaging or fixation.
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7

Adipocyte Differentiation via siRNA

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Barr2 siRNA pool (SMARTpool) and scrambled control siRNA were purchased from GE Dharmacon. On day 0, 3T3-F442A cells were transfected with siRNA using Lipofectamine RNAiMAX (Thermo Fisher Scientific) by following the manufacturer’s instructions. Four hour later, cells were changed to differentiation media (see previous paragraph). On day 5, differentiated 3T3-F442A adipocytes were used for further experiments.
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8

Gene Silencing and Overexpression of FXR1 in VSMCs

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Gene silencing was performed using ON-TARGET plus SMARTpool FXR1 siRNA, which contains a mixture of four siRNAs which target human FXR1 (10 nM) purchased from Dharmacon, Inc. (Lafayette, Co, USA) as we have described.16 (link),54 (link),57 (link) Scrambled control siRNA was also purchased from Dharmacon, Inc. Transfection of VSMC was performed using the AMAXA Nucleofector Kit (Amaxa, Inc., Gaithersburg, MD, USA) following the manufacturer’s instructions as we described.16 (link),49 (link),54 (link) For overexpression studies, adenovirus vector encoding human FXR1 cDNA (AdFXR1) and control GFP was purchased from Vigene Biosciences (Rockville, MD, USA). The AdenoFXR1 and control virus AdenoGFP were used at 100 MOI in the transduction of hVSMCs. Forty-eight hours after infections, VSMC were serum starved 24 h, then treated as described in the legend.
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9

Silencing NR1 Expression in C6 Cells

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Expression of NR1 was inhibited with a SMARTpool: ONTARGET plus Grin1 (24408) siRNA (Catalog # L-080174–02-0005) and scrambled control siRNA (Dharmacon, Inc, Pittsburg, PA). Briefly, C6 cells at 40% confluence were transfected with 50 nM siRNA using DharmaFECT-1. The expression level of NR1 was determined by Western blot analysis.
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10

Optimized siRNA Transfection Workflow

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4 × 105 cells/well (6-well plates) were cultured with 0.5 ml of OptiMEM media (Life Technologies) containing 5 µl Lipofectamine 2000 (Life Technologies) and 50 nM specific siRNAs or scrambled control siRNA (Dharmacon) for 6 h. OptiMEM media were removed, and cells were cultured in 2 ml DMEM supplemented with 10% FBS for 96 h before harvesting.
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