The largest database of trusted experimental protocols

7 protocols using anti ha

1

Characterization of Cellular Response to TNF-α

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293T cells (ATCC, CRL-3216™). A549 cells (SCSP-503) and THP-1 cells (TCHu 57) were purchased from the National Collection of Authenticated Cell Cultures (Shanghai, China). Sendai virus (SeV) was kindly provided by Prof. Yanyi Wang (Wuhan Institute of Virology, CAS) and propagated in SPF chicken embryonated eggs. Lipo293™ Transfection Reagent (Beyotime Biotechnology, C0521), Lipofectamine 2000 (Invitrogen, 11,668,019), dual-specific luciferase assay kits (Promega, E1980), human recombinant TNFα (R&D Systems, 210-TA-020/CF), BAY 11–7082 (MCE, HY-13,453), mouse anti-Flag (Sigma, F3165), rabbit anti-Flag (Proteintech, 20,543–1-AP), anti-β-actin (Cell Signaling Technology, # 3700S), anti-GAPDH (HuaBio, #R1210–1), anti-LMNB1(Proteintech, 2987–1-AP), anti-HA (Origene, TA100012), anti-TNF-α (Proteintech, 60,291–1-Ig), anti-phospho-NF-κB p65(Cell Signaling Technology, #3033S), anti-phospho-IκBα (Cell Signaling Technology, #9246S), anti-phospho-IKKα/β (Cell Signaling Technology, # 2697S), anti-IKK-β (Proteintech, 15,649–1-AP) anti-IκBα (Santa Cruz, sc-1643), anti-p65 (Santa Cruz, sc-8008), donkey anti-mouse IgG-Cy3 (Absin, abs20015) and goat anti-Rabbit IgG-FITC (Absin, abs20004ss) were purchased from the indicated companies.
+ Open protocol
+ Expand
2

Antibody Immunoblotting for Cellular Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies against phosphorylated and total IRF3, IKKε, TBK1, NF-κB p65, ERK, JNK, and p38 were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-TRAF3, anti-β-actin, and HRP-conjugated secondary antibodies were from Santa Cruz. Anti-Myc, anti-Flag, anti-HA, and anti-GFP were from Origene. Anti-PINK1, anti-Parkin, and anti-YAP1 were from Abcam Biotechnology (Cambridge, UK). Anti-K48-ubiquitin and anti-K63-ubiquitin were from Millipore (Kenilworth, USA).
+ Open protocol
+ Expand
3

Immunoprecipitation and Immunoblotting Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-Flag (Sigma-Aldrich), anti-Myc (Santa Cruz), anti-α-tubulin (Sigma-Aldrich), anti-His (Origene), anti-GST (Origene), and anti-HA (Origene) mouse monoclonal antibodies as well as anti-IL-1β (Santa Cruz) rabbit polyclonal antibodies were used as primary antibodies for immunoblotting and immunoprecipitation. HRP-conjugated goat anti-rabbit (ZSGB-BIO) or anti-mouse IgG (ZSGB-BIO) antibodies were used as secondary antibodies for immunoblotting.
Immunoprecipitation was performed using IP buffer (1% Nonidet P-40, 50 mM Tris-HCl [pH 7.5], 150 mM NaCl, and Complete™ protease inhibitor cocktail-EDTA (Roche)). Whole cell extracts were prepared after transfection and incubated with indicated antibodies together with Protein A/G beads (Roche) overnight. Beads were then washed 4 times with IP buffer, and immunoprecipitates were eluted with SDS loading buffer (TransGen Biotech) and resolved in SDS-PAGE gels. The proteins were transferred to PVDF membrane (Bio-Rad) and further incubated with the indicated antibodies. The antigen-antibody complexes were visualized by the Immubilon™ chemiluminescent detection kit (Millipore).
+ Open protocol
+ Expand
4

Immunoblotting Analysis of Cellular Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed using RIPA reagent (Pierce, Thermo Scientific) supplemented with a protease inhibitor cocktail (Sigma-Aldrich). Protein concentrations were measured using the Pierce BCA Protein Assay Kit (Thermo Scientific), and the cell lysates were denatured with loading buffer. For immunoblot analysis, immunoprecipitates or whole-cell lysates were loaded and separated by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE), and the proteins were transferred onto nitrocellulose membranes (Millipore) for immunoblot analysis as described previously51 (link). The following antibodies were used for immunoblot analysis: Anti-STING (1:1000, #13647), anti-TBK1 (1:1000, #3504), anti-p-IRF3 (1:1000, #4947), anti-IRF3 (1:1000, #4302), anti-p-STAT1 (1:1000, #9167), anti-cGAS (1:1000, #31659), and anti-streptavidin-HRP (1:1000, #3999) were purchased from Cell Signaling Technology. Anti-NMT1 (1:2000, ab186123), anti-ICP5 (1:3000, ab6508), anti-LC3B (1:2000, ab192890), and anti-p-TBK1 (1:1000, ab109272) were purchased from Abcam. Anti-Myc (1:5000, M4439) and anti-Flag (1:5000, F1804) antibodies were purchased from Sigma. Anti-β-actin (1:20,000, 66009-I-Ig) and anti-ARF1(1:1000, 20226-1-AP) were purchased from Proteintech. Anti-HA (1:2000, TA180128) was purchased from Origene.
+ Open protocol
+ Expand
5

Antibody and Reagent Sourcing Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies were obtained as follows: anti-SDMA-Arginine (13222 S, 1:500); anti-ADMA -Arginine (13522 S, 1:500); anti-MMA-anti- Arginine (8015 S, 1:500); anti-IRF3 (4302 S, 1:1000); anti-p-IRF3 (4947 s, 1:1000); anti-TBK1(3013 S, 1:1000); anti-p-TBK1 (5483 S, 1:1000); and anti-PCNA (#13110, 1:1000) were purchased from Cell Singling Technologies; anti-PRMT9 (Abclonal, WG-03137D, 1:1000); anti-TOMM20 (Abcam, ab186734, 1:1000); anti-VSV G (Sigma Aldrich, 1:500); anti-Myc (Origene, 9E10, 1:1000); anti-HA (Origene, TA180128, 1:1000); anti-Flag (Sigma Aldrich, F1804, 1:1000); anti-MAVS (Santa Cruz Biotechnology, sc-365333, 1:500 for WB, 1:100 for Co-IP); anti-GFP (Santa Cruz Biotechnology, sc-9996, 1:1000); anti-β-actin (ZSGB-BIO, TA-09 Mouse, 1:1000), Goat-anti-mouse AlexaFluor-488(Cat.#:A-11001; AB_2534069, 1:200), Goat-anti-rabbit AlexaFluor-488 (Cat.#:A-11034; AB_2576217, 1:200), Goat-anti-mouse AlexaFluor-568 (Cat.#:A-11004; AB_2534072, 1:200), Goat-anti-rabbit AlexaFluor-568 (Cat.#:A-11011; AB_143157, 1:200), and 5′-pppRNA were purchased from Invivogen, with 0.5 μg/ml being used as a final concentration.
+ Open protocol
+ Expand
6

Immunoblotting and Immunoprecipitation Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-Flag (Sigma-Aldrich), anti-Myc (Santa Cruz), anti-α-tubulin (Sigma-Aldrich), and anti-HA (Origene) mouse monoclonal antibodies were used as primary antibodies for immunoblotting and immunoprecipitation. HRP-conjugated goat anti-mouse IgG (ZSGB-BIO) antibodies were used as secondary antibodies for immunoblotting.
+ Open protocol
+ Expand
7

Protein Expression and Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Preparation of whole cell lysates and western blot analysis was performed as described. The primary antibodies used in this study were anti-EGFP (1:1000, Origene, USA), anti-HA (1:1000, Origene, USA), anti-Flag (1:1000, Santa Cruz, USA), anti-LC3 (1:1000, Cell signaling, USA), anti-RACK1 (1:1000, Cell signaling, USA) and anti-Actin (1:1000, Santa Cruz, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!